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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
hnRNP A1 RRM2 in complex with 5'-UCAGUU-3' RNA

Results of the assignment of 100 detected steps in 20 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0015mpl-m10_B_U1_C2NANNANT02.30OP17
0025mpl-m11_B_U1_C2NANNANT00.99OP18
0035mpl-m12_B_U1_C2NANNANT01.21OP21
0045mpl-m13_B_U1_C2NANNANT01.41OP01
0055mpl-m14_B_U1_C2NANNANT02.04IC03
0065mpl-m15_B_U1_C2NANNANT01.56OP11
0075mpl-m16_B_U1_C2NANNANT02.10IC03
0085mpl-m17_B_U1_C2NANNANT01.14OP21
0095mpl-m18_B_U1_C2NANNANT01.55OP11
0105mpl-m19_B_U1_C2NANNANT00.69OP18
0115mpl-m1_B_U1_C2NANNANT01.80OP11
0125mpl-m20_B_U1_C2NANNANT02.44BB14
0135mpl-m2_B_U1_C2NANNANT01.93IC03
0145mpl-m3_B_U1_C2NANNANT01.73OP17
0155mpl-m4_B_U1_C2NANNANT02.12OP18
0165mpl-m5_B_U1_C2NANNANT01.59OP17
0175mpl-m6_B_U1_C2NANNANT01.69OP20
0185mpl-m7_B_U1_C2NANNANT01.82OP20
0195mpl-m8_B_U1_C2NANNANT01.38OP13
0205mpl-m9_B_U1_C2NANNANT01.52OP11
0215mpl-m10_B_C2_A3NANNANT01.54BB02
0225mpl-m11_B_C2_A3NANNANT01.54IC03
0235mpl-m12_B_C2_A3NANNANT01.45IC03
0245mpl-m13_B_C2_A3NANNANT01.72BB02
0255mpl-m14_B_C2_A3NANNANT01.01OP08
0265mpl-m15_B_C2_A3NANNANT01.48OP19
0275mpl-m16_B_C2_A3NANNANT01.79IC04
0285mpl-m17_B_C2_A3NANNANT01.29BB11
0295mpl-m18_B_C2_A3NANNANT01.68BB02
0305mpl-m19_B_C2_A3NANNANT01.77IC04
0315mpl-m1_B_C2_A3NANNANT01.68IC04
0325mpl-m20_B_C2_A3NANNANT01.75BB11
0335mpl-m2_B_C2_A3NANNANT01.63IC03
0345mpl-m3_B_C2_A3NANNANT01.48IC04
0355mpl-m4_B_C2_A3NANNANT01.76IC04
0365mpl-m5_B_C2_A3NANNANT01.35IC04
0375mpl-m6_B_C2_A3NANNANT01.50IC03
0385mpl-m7_B_C2_A3NANNANT01.66IC04
0395mpl-m8_B_C2_A3NANNANT01.60BB11
0405mpl-m9_B_C2_A3NANNANT01.73BB02
0415mpl-m10_B_A3_G4NANNANT00.64BB2S
0425mpl-m11_B_A3_G4NANNANT00.60BB1S
0435mpl-m12_B_A3_G4NANNANT01.53ZZ1S
0445mpl-m13_B_A3_G4NANNANT00.60BB2S
0455mpl-m14_B_A3_G4NANNANT00.58BB1S
0465mpl-m15_B_A3_G4NANNANT00.73BB2S
0475mpl-m16_B_A3_G4NANNANT00.59BB1S
0485mpl-m17_B_A3_G4NANNANT00.76BB2S
0495mpl-m18_B_A3_G4NANNANT00.61BB2S
0505mpl-m19_B_A3_G4NANNANT00.63BB1S
0515mpl-m1_B_A3_G4NANNANT00.70BB2S
0525mpl-m20_B_A3_G4NANNANT00.62BB2S
0535mpl-m2_B_A3_G4NANNANT00.61BB1S
0545mpl-m3_B_A3_G4NANNANT01.56ZZ1S
0555mpl-m4_B_A3_G4NANNANT00.53BB1S
0565mpl-m5_B_A3_G4NANNANT00.61BB2S
0575mpl-m6_B_A3_G4NANNANT01.57ZZ2S
0585mpl-m7_B_A3_G4NANNANT00.65BB2S
0595mpl-m8_B_A3_G4NANNANT00.72BB2S
0605mpl-m9_B_A3_G4NANNANT00.55BB2S
0615mpl-m10_B_G4_U5NANNANT01.46OPS1
0625mpl-m11_B_G4_U5NANNANT01.88IC03
0635mpl-m12_B_G4_U5NANNANT02.25IC03
0645mpl-m13_B_G4_U5NANNANT01.74IC03
0655mpl-m14_B_G4_U5NANNANT01.91OP03
0665mpl-m15_B_G4_U5NANNANT01.35OP21
0675mpl-m16_B_G4_U5NANNANT02.25IC03
0685mpl-m17_B_G4_U5NANNANT02.22IC03
0695mpl-m18_B_G4_U5NANNANT01.54OP21
0705mpl-m19_B_G4_U5NANNANT01.91OP21
0715mpl-m1_B_G4_U5NANNANT01.88OP03
0725mpl-m20_B_G4_U5NANNANT01.61OPS1
0735mpl-m2_B_G4_U5NANNANT01.57OPS1
0745mpl-m3_B_G4_U5NANNANT01.57OP21
0755mpl-m4_B_G4_U5NANNANT01.80IC03
0765mpl-m5_B_G4_U5NANNANT01.67OPS1
0775mpl-m6_B_G4_U5NANNANT01.49OPS1
0785mpl-m7_B_G4_U5NANNANT01.64OPS1
0795mpl-m8_B_G4_U5NANNANT01.87IC03
0805mpl-m9_B_G4_U5NANNANT01.68OPS1
0815mpl-m10_B_U5_U6NANNANT01.67IC05
0825mpl-m11_B_U5_U6NANNANT00.71OP17
0835mpl-m12_B_U5_U6NANNANT01.43OP21
0845mpl-m13_B_U5_U6NANNANT01.92OP19
0855mpl-m14_B_U5_U6NANNANT01.15OP13
0865mpl-m15_B_U5_U6NANNANT01.92OP19
0875mpl-m16_B_U5_U6NANNANT01.36AB02
0885mpl-m17_B_U5_U6NANNANT01.38OP13
0895mpl-m18_B_U5_U6NANNANT01.94OP17
0905mpl-m19_B_U5_U6NANNANT01.47OP19
0915mpl-m1_B_U5_U6NANNANT01.29OP21
0925mpl-m20_B_U5_U6NANNANT01.31IC05
0935mpl-m2_B_U5_U6NANNANT02.10OP17
0945mpl-m3_B_U5_U6NANNANT01.72OP21
0955mpl-m4_B_U5_U6NANNANT01.95OP17
0965mpl-m5_B_U5_U6NANNANT01.68OP20
0975mpl-m6_B_U5_U6NANNANT00.48IC05
0985mpl-m7_B_U5_U6NANNANT01.65OP16
0995mpl-m8_B_U5_U6NANNANT01.81BB08
1005mpl-m9_B_U5_U6NANNANT01.05IC05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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IC

OPN

Z

N