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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space group P3212.

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015nz6_A_G3_G4AAAAA08810.20AA08
025nz6_A_G4_A5NANNANT00.58IC03
035nz6_A_A5_C6NANNANT00.64AB05
045nz6_A_C6_G7B-ABA08160.52BA08
055nz6_A_G7_A8AAAAA00770.21AA00
065nz6_A_A8_G9AAAAA00780.20AA00
075nz6_A_G9_G10AAAAA08770.22AA08
085nz6_A_G10_U11ZZZZZ01100.36ZZ01
095nz6_A_U11_G12NANNANT00.60OP26
105nz6_A_G12_C13AAAAA00800.21AA00
115nz6_A_C13_G14AAwAA06110.44AA06
125nz6_A_G14_C15AAAAA00790.26AA00
135nz6_A_C15_C16AAwAA01790.10AA01
145nz6_A_C16_G17AAAAA00500.24AA00
155nz6_A_G17_U18AAAAA00620.25AA00
165nz6_A_U18_A19AAAAA00630.30AA00
175nz6_A_A19_C20AAAAA08250.64AA08
185nz6_A_C20_C21AAAAA08900.17AA08
195nz6_A_C21_C22AAAAA00470.24AA00
205nz6_A_C22_G23AAwAA10820.17AA10
215nz6_A_G23_G24A-BAB04490.30AB04
225nz6_A_G24_U25OPNOP22340.64OP22
235nz6_A_U25_C26NANNANT00.46OP21
245nz6_A_C26_A27NANNANT00.38OP11
255nz6_A_A27_C28NANNANT00.99OP06
265nz6_A_C28_G29NANNANT01.37OP29
275nz6_A_G29_A30NANNANT01.29OP06
285nz6_A_A30_C31NANNANT00.44AAS1
295nz6_A_C31_A32AAAAA08650.47AA08
305nz6_A_A32_A33AAAAA08750.25AA08
315nz6_A_A33_G34AAwAA06370.32AA06
325nz6_A_G34_A35NANNANT00.59AA07
335nz6_A_A35_C36NANNANT00.47BA08
345nz6_A_C36_G37AAAAA00550.24AA00
355nz6_A_G37_G38AAAAA00690.22AA00
365nz6_A_G40_C41AAAAA08540.56AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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Color by NtC (balls)

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IC

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Z

N