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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space group P3212.

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015nz6_A_G3_G4AAAAA08810.27AA08
025nz6_A_G4_A5NANNANT00.59IC03
035nz6_A_A5_C6NANNANT00.63AB03
045nz6_A_C6_G7B-ABA08280.52BA08
055nz6_A_G7_A8AAAAA00780.20AA00
065nz6_A_A8_G9AAAAA00780.17AA00
075nz6_A_G9_G10AAAAA08780.19AA08
085nz6_A_G10_U11ZZZZZ01100.32ZZ01
095nz6_A_U11_G12NANNANT00.89BB20
105nz6_A_G12_C13AAAAA00810.16AA00
115nz6_A_C13_G14AA1AA06130.38AA06
125nz6_A_G14_C15AAAAA00790.21AA00
135nz6_A_C15_C16AA1AA01820.10AA01
145nz6_A_C16_G17AAAAA00510.25AA00
155nz6_A_G17_U18AAAAA00620.18AA00
165nz6_A_U18_A19AAAAA00640.22AA00
175nz6_A_A19_C20AAAAA08260.57AA08
185nz6_A_C20_C21AAAAA08910.14AA08
195nz6_A_C21_C22AAAAA00470.22AA00
205nz6_A_C22_G23AA1AA10830.17AA10
215nz6_A_G23_G24A-BAB04470.30AB04
225nz6_A_G24_U25NANNANT00.77OP10
235nz6_A_U25_C26NANNANT00.47OP21
245nz6_A_C26_A27NANNANT00.45OP11
255nz6_A_A27_C28NANNANT01.18OP01
265nz6_A_C28_G29NANNANT01.01OPS1
275nz6_A_G29_A30NANNANT01.29OP06
285nz6_A_A30_C31NANNANT00.30AAS1
295nz6_A_C31_A32AAAAA08660.43AA08
305nz6_A_A32_A33AAAAA08750.21AA08
315nz6_A_A33_G34AA1AA06390.31AA06
325nz6_A_G34_A35NANNANT00.59AA07
335nz6_A_A35_C36NANNANT00.47BA08
345nz6_A_C36_G37AAAAA00550.20AA00
355nz6_A_G37_G38AAAAA00710.14AA00
365nz6_A_G40_C41AAAAA08560.60AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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Color by conformation group (pyramids)

group
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Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N