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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Glucocorticoid Receptor DNA Binding Domain in complex with AP-1 response element from VCAM-1 Promoter

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015va0_C_DC517_DG518BB1BB16860.43BB16
025va0_C_DG518_DG519B12BB04580.21BB04
035va0_C_DG519_DC520BBBBB01800.15BB01
045va0_C_DC520_DT521BBBBB01750.20BB01
055va0_C_DT521_DG522BBBBB00790.24BB00
065va0_C_DG522_DA523BBBBB00870.13BB00
075va0_C_DA523_DC524B-ABA01330.17BA01
085va0_C_DC524_DT525A-BAB03950.27AB03
095va0_C_DT525_DC526BBBBB00800.18BB00
105va0_C_DC526_DA527B12BB04830.09BB04
115va0_C_DA527_DT528BBBBB00900.16BB00
125va0_C_DT528_DC529BB1BB02740.23BB02
135va0_C_DC529_DA530BBBBB00320.24BB00
145va0_C_DA530_DA531BBBBB01910.17BB01
155va0_C_DA531_DG532BBBBB00460.17BB00
165va0_D_DC501_DT502A-BAB01210.40AB01
175va0_D_DT502_DT503BBBBB01420.20BB01
185va0_D_DT503_DG504BBBBB00400.22BB00
195va0_D_DG504_DA505BBBBB00860.22BB00
205va0_D_DA505_DT506BBBBB01770.16BB01
215va0_D_DT506_DG507BBBBB00150.29BB00
225va0_D_DG507_DA508B12BB04840.14BB04
235va0_D_DA508_DG509BBBBB01900.10BB01
245va0_D_DG509_DT510BBBBB00660.15BB00
255va0_D_DT510_DC511BBBBB00860.23BB00
265va0_D_DC511_DA512B-ABA08870.18BA08
275va0_D_DA512_DG513A-BAB01750.18AB01
285va0_D_DG513_DC514BBBBB01880.19BB01
295va0_D_DC514_DC515BBBBB00650.26BB00
305va0_D_DC515_DG516BBBBB00680.29BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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