Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Glucocorticoid Receptor DNA Binding Domain - IL11 AP-1 recognition element Complex

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015va7_C_DA859_DG860B12BB04630.32BB04
025va7_C_DG860_DG861B12BB04900.15BB04
035va7_C_DG861_DG862BBBBB00760.20BB00
045va7_C_DG862_DT863BBBBB00830.14BB00
055va7_C_DT863_DG864BBBBB00690.26BB00
065va7_C_DG864_DA865BBBBB00910.16BB00
075va7_C_DA865_DG866B12BB04810.22BB04
085va7_C_DG866_DT867BBBBB00730.18BB00
095va7_C_DT867_DC868BBBBB01290.21BB01
105va7_C_DC868_DA869BBBBB00200.30BB00
115va7_C_DA869_DG870B12BB04670.24BB04
125va7_C_DG870_DG871B12BB04690.17BB04
135va7_C_DG871_DA872BBBBB00880.12BB00
145va7_C_DA872_DT873BBBBB01740.24BB01
155va7_C_DT873_DG874BBBBB00340.24BB00
165va7_D_DC840_DA841A-BAB04360.38AB04
175va7_D_DA841_DT842BBBBB00600.20BB00
185va7_D_DT842_DC843BBBBB00600.18BB00
195va7_D_DC843_DC844BBBBB00850.14BB00
205va7_D_DC844_DT845BBBBB01660.13BB01
215va7_D_DT845_DG846A-BAB03550.21AB03
225va7_D_DG846_DA847B12BB04960.18BB04
235va7_D_DA847_DC848BBBBB01870.13BB01
245va7_D_DC848_DT849BBBBB01750.16BB01
255va7_D_DT849_DC850BBBBB01340.23BB01
265va7_D_DC850_DA851B-ABA08790.27BA08
275va7_D_DA851_DC852A-BAB03540.27AB03
285va7_D_DC852_DC853BBBBB00660.17BB00
295va7_D_DC853_DC854BBBBB00730.22BB00
305va7_D_DC854_DT855BBBBB00890.15BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N