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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site

Results of the assignment of 60 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015zeg_A_U1_U2AAAAA00900.15AA00
025zeg_A_U2_G3AAAAA00950.10AA00
035zeg_A_G3_C4AAAAA00970.15AA00
045zeg_A_C4_G5AAAAA00710.14AA00
055zeg_A_G5_U6AAAAA00570.32AA00
065zeg_A_U6_C7AAAAA00870.17AA00
075zeg_A_C9_G10AAAAA00820.20AA00
085zeg_A_G10_U11AAAAA00960.14AA00
095zeg_A_U11_C12AAAAA00910.10AA00
105zeg_A_C12_G13AAAAA00950.13AA00
115zeg_A_G13_A14AAAAA00910.18AA00
125zeg_A_A14_C15AAAAA00840.12AA00
135zeg_A_C15_G16AAAAA00780.21AA00
145zeg_A_G16_A17NANNANT00.79OP07
155zeg_A_A17_A18AAAAA00630.28AA00
165zeg_A_A18_G19NANNANT00.58AA08
175zeg_A_G19_U20NANNANT00.71AA12
185zeg_A_U20_C21AAAAA08930.15AA08
195zeg_A_C21_G22AA1AA01930.17AA01
205zeg_A_G22_C23AAAAA00740.15AA00
215zeg_B_U24_U25AAAAA08210.54AA08
225zeg_B_U25_G26AA2AA12620.26AA12
235zeg_B_G26_C27AAAAA00940.13AA00
245zeg_B_C27_G28AAAAA00830.10AA00
255zeg_B_G28_U29AAAAA00650.21AA00
265zeg_B_U29_C30AAAAA00730.17AA00
275zeg_B_C32_G33AAAAA00860.11AA00
285zeg_B_G33_U34AAAAA00970.15AA00
295zeg_B_U34_C35AAAAA00920.12AA00
305zeg_B_C35_G36AAAAA00900.11AA00
315zeg_B_G36_A37AAAAA00960.15AA00
325zeg_B_A37_C38AAAAA00830.13AA00
335zeg_B_C38_G39AAAAA00940.12AA00
345zeg_B_G39_A40NANNANT01.20IC03
355zeg_B_A40_A41NANNANT00.55BA16
365zeg_B_A41_G42NANNANT01.17OPS1
375zeg_B_G42_U43AAAAA00740.21AA00
385zeg_B_U43_C44AAAAA08890.26AA08
395zeg_B_C44_G45AAAAA00900.15AA00
405zeg_B_G45_C46AAAAA00840.13AA00
415zeg_C_U1_U2AAAAA00620.31AA00
425zeg_C_U2_G3AAAAA00750.24AA00
435zeg_C_G3_C4AAAAA08890.17AA08
445zeg_C_C4_G5AAAAA00610.20AA00
455zeg_C_G5_U6AAAAA08810.30AA08
465zeg_C_U6_C7AAAAA08820.29AA08
475zeg_C_C9_G10AAAAA00760.16AA00
485zeg_C_G10_U11AAAAA00920.16AA00
495zeg_C_U11_C12AAAAA08850.22AA08
505zeg_C_C12_G13AAAAA00860.12AA00
515zeg_C_G13_A14AAAAA00950.14AA00
525zeg_C_A14_C15AAAAA00820.12AA00
535zeg_C_C15_G16A-BAB05860.14AB05
545zeg_C_G16_A17NANNANT00.37OP17
555zeg_C_A17_A18A-BAB04540.32AB04
565zeg_C_A18_G19NANNANT00.45OP11
575zeg_C_G19_U20AAAAA00150.41AA00
585zeg_C_U20_C21AAAAA00810.17AA00
595zeg_C_C21_G22AAAAA00760.22AA00
605zeg_C_G22_C23AAAAA00920.14AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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