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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Structure of histone demethylase REF6 complexed with DNA

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016a57_B_DC1_DT2AAAAA00860.16AA00
026a57_B_DT2_DT3A-BAB01420.27AB01
036a57_B_DT3_DT4BBBBB01880.14BB01
046a57_B_DT4_DC5B-ABA05880.17BA05
056a57_B_DC5_DT6A-BAB03580.44AB03
066a57_B_DT6_DC7BBBBB00860.15BB00
076a57_B_DC7_DT8BBBBB00850.30BB00
086a57_B_DT8_DG9BB2BB07820.24BB07
096a57_B_DG9_DT10BBBBB01780.17BB01
106a57_B_DT10_DT11BBBBB01630.23BB01
116a57_B_DT11_DT12BBBBB00860.19BB00
126a57_B_DT12_DT13BBBBB01890.16BB01
136a57_B_DT13_DG14BBBBB00910.10BB00
146a57_B_DG14_DT15BBBBB00760.18BB00
156a57_B_DT15_DC16B-ABA05860.13BA05
166a57_C_DG21_DG22AAAAA08570.35AA08
176a57_C_DG22_DA23NANNANT00.56BB13
186a57_C_DA23_DC24NANNANT00.37BB16
196a57_C_DC24_DA25A-BAB03870.29AB03
206a57_C_DA25_DA26BBBBB00930.15BB00
216a57_C_DA26_DA27BBBBB01670.22BB01
226a57_C_DA27_DA28BBBBB01730.19BB01
236a57_C_DA28_DC29BBBBB01810.26BB01
246a57_C_DC29_DA30BBBBB00720.34BB00
256a57_C_DA30_DG31B-ABA09530.35BA09
266a57_C_DG31_DA32A-BAB01470.34AB01
276a57_C_DA32_DG33BBBBB00770.42BB00
286a57_C_DG33_DA34BB2BB07760.28BB07
296a57_C_DA34_DA35BBBBB00900.15BB00
306a57_C_DA35_DA36BBBBB00770.20BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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