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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Pre-catalytic Ternary Complex of Human DNA Polymerase Mu with Templating Adenine and Incoming Ca-8oxodGTP

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016ak8_T_DC1_DG2A-BAB01220.27AB01
026ak8_T_DG2_DG3B-ABA05770.22BA05
036ak8_T_DG3_DC4BBBBB01620.28BB01
046ak8_T_DC4_DA5NANNANT01.15OP21
056ak8_T_DA5_DT6BBBBB00600.36BB00
066ak8_T_DT6_DA7B-ABA10570.38BA10
076ak8_T_DA7_DC8A-BAB05920.15AB05
086ak8_T_DC8_DG9BBBBB00170.42BB00
096ak8_P_DC1_DG2AAAAA00830.13AA00
106ak8_P_DG2_DT3AAAAA00650.14AA00
116ak8_P_DT3_DA.A4AAAAA00700.21AA00
126ak8_D_DG1_DC2B-ABA05110.26BA05
136ak8_D_DC2_DC.A3NANNANT00.56AB03
146ak8_D_DC2_DC.B3A-BAB01420.25AB01
156ak8_D_DC.A3_DG.A4NANNANT00.49AB02
166ak8_D_DC.B3_DG.B4BBBBB00840.29BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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