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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Pre-catalytic Ternary Complex of Human DNA Polymerase Mu with Templating Cytosine and Incoming Ca-8oxodGTP

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016ak9_T_DC1_DG2A-BAB01460.28AB01
026ak9_T_DG2_DG3B-ABA05760.22BA05
036ak9_T_DG3_DC4BBBBB01660.28BB01
046ak9_T_DC4_DC5NANNANT01.15OP21
056ak9_T_DC5_DT6BBBBB00730.33BB00
066ak9_T_DT6_DA7NANNANT00.44BA08
076ak9_T_DA7_DC8A-BAB04290.40AB04
086ak9_T_DC8_DG9BBBBB00240.39BB00
096ak9_P_DC1_DG2AAAAA00870.12AA00
106ak9_P_DG2_DT3AAAAA00790.14AA00
116ak9_P_DT3_DA4AAAAA00740.19AA00
126ak9_D_DG1_DC2B-ABA05210.26BA05
136ak9_D_DC2_DC.A3NANNANT00.49AA02
146ak9_D_DC2_DC.B3A-BAB01720.23AB01
156ak9_D_DC.A3_DG.A4A-BAB02620.36AB02
166ak9_D_DC.B3_DG.B4BBBBB00850.32BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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