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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Pre-catalytic Ternary Complex of Human DNA Polymerase Mu with Templating Adenine and Incoming Mn-dUMPNPP

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016akh_T_DC1_DG2A-BAB01140.28AB01
026akh_T_DG2_DG3B-ABA05660.22BA05
036akh_T_DG3_DC4BBBBB01680.27BB01
046akh_T_DC4_DA5NANNANT01.14OP21
056akh_T_DA5_DT6BBBBB00640.35BB00
066akh_T_DT6_DA7B-ABA10550.39BA10
076akh_T_DA7_DC8A-BAB05510.17AB05
086akh_T_DC8_DG9BBBBB00220.41BB00
096akh_P_DC1_DG2AAAAA00860.13AA00
106akh_P_DG2_DT3AAAAA00780.14AA00
116akh_P_DT3_DA.A4AAAAA00550.24AA00
126akh_D_DG1_DC2B-ABA05190.26BA05
136akh_D_DC2_DC.A3A-BAB01200.39AB01
146akh_D_DC2_DC.B3BBBBB01180.31BB01
156akh_D_DC.A3_DG.A4NANNANT00.66AB02
166akh_D_DC.B3_DG.B4BBBBB00610.40BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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