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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Hydrogen Bonding Complementary, not size complementarity is key in the formation of the double helix

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016b1s_E_DC1_DT2A-BAB05730.21AB05
026b1s_E_DT2_DT3BBBBB00780.26BB00
036b1s_E_DT3_DA4BB2BB07900.21BB07
046b1s_E_DA4_DT5BBBBB01720.20BB01
056b1s_E_DT5_DA6BBBBB01200.37BB01
066b1s_E_DT9_DT10BBBBB00900.19BB00
076b1s_E_DT10_DT11NANNANT00.75BB02
086b1s_E_DT11_DA12NANNANT00.43BB03
096b1s_E_DA12_DT13NANNANT00.41BA10
106b1s_E_DT13_DA14A-BAB03660.36AB03
116b1s_E_DA14_DA15BBBBB01780.16BB01
126b1s_E_DA15_DG16BBBBB00220.30BB00
136b1s_F_DC1_DT2A-BAB05710.16AB05
146b1s_F_DT2_DT3BBBBB01830.11BB01
156b1s_F_DT3_DA4BBBBB00760.20BB00
166b1s_F_DA4_DT5BBBBB01700.18BB01
176b1s_F_DT5_DA6BBBBB00440.22BB00
186b1s_F_DT9_DT10NANNANT00.52AB03
196b1s_F_DT10_DT11NANNANT00.68AB02
206b1s_F_DT11_DA12NANNANT00.63BB07
216b1s_F_DA12_DT13B-ABA05410.28BA05
226b1s_F_DT13_DA14A-BAB02770.26AB02
236b1s_F_DA14_DA15B-ABA01820.14BA01
246b1s_F_DA15_DG16A-BAB01860.16AB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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