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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal Structure of Human DNA polymerase kappa in complex with DNA containing the major cisplatin lesion

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016brx_C_DT5_DA6BBBBB00260.19BB00
026brx_C_DA6_DC7B-ABA05470.22BA05
036brx_C_DC7_DA8BBBBB01370.30BB01
046brx_C_DA8_DT9miBBB15880.19BB15
056brx_C_DT9_DA10BBBBB00670.21BB00
066brx_C_DA10_DC11B-ABA05820.17BA05
076brx_C_DC11_DA12AAAAA02400.41AA02
086brx_C_DA12_DC13AAAAA02490.32AA02
096brx_D_DT2_DA3NANNANT00.72BB02
106brx_D_DA3_DT4NANNANT01.13OP20
116brx_D_DT4_DG5NANNANT01.22IC05
126brx_D_DG5_DG6BBBBB00330.34BB00
136brx_D_DG6_DT7BB1BB02120.44BB02
146brx_D_DT7_DG8B-ABA05710.23BA05
156brx_D_DG8_DT9BBBBB00130.28BB00
166brx_D_DT9_DA10BBBBB00810.15BB00
176brx_D_DA10_DT11BBBBB00680.26BB00
186brx_D_DT11_DG12BB2BB07710.38BB07
196brx_D_DG12_DT13BBBBB01250.18BB01
206brx_D_DT13_DA14BBBBB01530.25BB01
216brx_P_DT5_DA6BBBBB00800.21BB00
226brx_P_DA6_DC7BBBBB01520.23BB01
236brx_P_DC7_DA8BBBBB01490.23BB01
246brx_P_DA8_DT9BBBBB00810.20BB00
256brx_P_DT9_DA10BBBBB00810.16BB00
266brx_P_DA10_DC11B-ABA05740.16BA05
276brx_P_DC11_DA12AAAAA02420.43AA02
286brx_P_DA12_DC13AAAAA02480.30AA02
296brx_T_DT2_DA3BB1BB16210.50BB16
306brx_T_DA3_DT4NANNANT01.14OP20
316brx_T_DT4_DG5NANNANT01.19IC05
326brx_T_DG5_DG6BBBBB00140.38BB00
336brx_T_DG6_DT7BB1BB02120.44BB02
346brx_T_DT7_DG8B-ABA05750.22BA05
356brx_T_DG8_DT9BBBBB00110.29BB00
366brx_T_DT9_DA10BBBBB00850.13BB00
376brx_T_DA10_DT11BBBBB00670.26BB00
386brx_T_DT11_DG12BB2BB07680.42BB07
396brx_T_DG12_DT13BBBBB01400.15BB01
406brx_T_DT13_DA14BBBBB01690.23BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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