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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

MEF2 CHIMERA/DNA Complex

Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016byy_K_DA2_DA3BBwBB02380.25BB02
026byy_K_DA3_DC4BBBBB00600.22BB00
036byy_K_DC4_DT5BBBBB00670.26BB00
046byy_K_DT5_DA6BB2BB07780.20BB07
056byy_K_DA6_DT7BBwBB02110.32BB02
066byy_K_DT7_DT8BBBBB00890.21BB00
076byy_K_DT8_DT9BBBBB00770.15BB00
086byy_K_DT9_DA10BBBBB00850.22BB00
096byy_K_DA10_DT11BBBBB00890.22BB00
106byy_K_DT11_DA12BB2BB07590.31BB07
116byy_K_DA12_DA13NANNANT00.35BB02
126byy_K_DA13_DG14BBBBB00320.26BB00
136byy_K_DG14_DA15BBBBB00520.24BB00
146byy_L_DT2_DC3NANNANT00.82AA00
156byy_L_DC3_DT4NANNANT00.53AB02
166byy_L_DT4_DT5miBBB15620.40BB15
176byy_L_DT5_DA6B12BB04720.21BB04
186byy_L_DA6_DT7B-ABA05880.24BA05
196byy_L_DT7_DA8BBBBB00190.37BB00
206byy_L_DA8_DA9BBBBB00880.14BB00
216byy_L_DA9_DA10BBBBB00900.20BB00
226byy_L_DA10_DT11BBBBB00850.22BB00
236byy_L_DT11_DA12BB2BB07610.36BB07
246byy_L_DA12_DG13BBBBB00630.27BB00
256byy_L_DG13_DT14BBBBB00770.30BB00
266byy_L_DT14_DT15BBBBB00950.11BB00
276byy_E_DA2_DA3NANNANT00.73IC06
286byy_E_DA3_DC4NANNANT00.58AB02
296byy_E_DC4_DT5NANNANT00.70BB11
306byy_E_DT5_DA6BBBBB00160.56BB00
316byy_E_DA6_DT7B-ABA05680.27BA05
326byy_E_DT7_DT8BBBBB01110.43BB01
336byy_E_DT8_DT9BBBBB01300.27BB01
346byy_E_DT9_DA10BBBBB00110.33BB00
356byy_E_DA10_DT11BBBBB00790.23BB00
366byy_E_DT11_DA12BB2BB07560.31BB07
376byy_E_DA12_DA13BBBBB00540.28BB00
386byy_E_DA13_DG14BBBBB00670.27BB00
396byy_E_DG14_DA15BBBBB00930.19BB00
406byy_F_DT2_DC3B-ABA0180.41BA01
416byy_F_DC3_DT4NANNANT00.35AB02
426byy_F_DT4_DT5BBBBB00120.43BB00
436byy_F_DT5_DA6BB2BB07630.18BB07
446byy_F_DA6_DT7B-ABA01800.21BA01
456byy_F_DT7_DA8A-BAB01150.41AB01
466byy_F_DA8_DA9BBBBB00640.20BB00
476byy_F_DA9_DA10B12BB04690.19BB04
486byy_F_DA10_DT11BBBBB00240.34BB00
496byy_F_DT11_DA12NANNANT00.51BB07
506byy_F_DA12_DG13BBBBB00450.39BB00
516byy_F_DG13_DT14BBBBB00500.34BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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