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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CBr2, beta, gamma dATP analogue

Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016cr3_T_DC1_DC2BBBBB00800.29BB00
026cr3_T_DC2_DG3BB2BB07930.15BB07
036cr3_T_DG3_DA4B-ABA08240.44BA08
046cr3_T_DA4_DC5BBBBB01510.26BB01
056cr3_T_DC5_DT6NANNANT01.26OP21
066cr3_T_DT6_DG7B-ABA05900.16BA05
076cr3_T_DG7_DC8A-BAB03690.36AB03
086cr3_T_DC8_DG9BB2BB07410.43BB07
096cr3_T_DG9_DC10BBBBB00850.17BB00
106cr3_T_DC10_DA11BBBBB00920.20BB00
116cr3_T_DA11_DT12B-ABA05880.12BA05
126cr3_T_DT12_DC13BBBBB01610.18BB01
136cr3_T_DC13_DA14B12BB04340.20BB04
146cr3_T_DA14_DG15BBBBB00930.12BB00
156cr3_T_DG15_DC16BBBBB01610.18BB01
166cr3_P_DG1_DC2BBBBB00450.28BB00
176cr3_P_DC2_DT3BBBBB00740.15BB00
186cr3_P_DT3_DG4BBBBB00730.19BB00
196cr3_P_DG4_DA5miBBB12230.59BB12
206cr3_P_DA5_DT6BBwBB16720.36BB16
216cr3_P_DT6_DG7BBBBB00860.15BB00
226cr3_P_DG7_DC8B-ABA05850.07BA05
236cr3_P_DC8_DG9A-BAB01520.33AB01
246cr3_D_DG1_DT2BBBBB00810.27BB00
256cr3_D_DT2_DC3BBBBB00930.10BB00
266cr3_D_DC3_DG4B12BB04710.33BB04
276cr3_D_DG4_DG5BBBBB00840.27BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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