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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016df5_D_DT1_DG2B12BB04860.16BB04
026df5_D_DG2_DC3miBBB12420.49BB12
036df5_D_DC3_DT4NANNANT00.36BB16
046df5_D_DT4_DT5B-ABA05670.20BA05
056df5_D_DT5_DC6BBBBB00380.27BB00
066df5_D_DC6_DC7BBBBB01680.18BB01
076df5_D_DC7_DT8BBBBB00320.41BB00
086df5_D_DT8_DG9B12BB04790.28BB04
096df5_D_DG9_DC10B-ABA05940.20BA05
106df5_D_DC10_DC11A-BAB03480.28AB03
116df5_D_DC11_DA12BB2BB07920.17BB07
126df5_D_DA12_DA13BBBBB00880.16BB00
136df5_D_DA13_DT14BBBBB01260.17BB01
146df5_D_DT14_DA15BBBBB01230.27BB01
156df5_D_DA15_DA16miBBB10220.30BB10
166df5_D_DA16_DC17BBBBB00610.27BB00
176df5_D_DC17_DG18NANNANT00.38BB10
186df5_E_DC19_DG20B12BB04430.40BB04
196df5_E_DG20_DT21BBBBB00850.15BB00
206df5_E_DT21_DT22BBBBB01770.17BB01
216df5_E_DT22_DA23BBBBB01690.18BB01
226df5_E_DA23_DT24BBBBB01810.19BB01
236df5_E_DT24_DT25BBBBB00710.24BB00
246df5_E_DT25_DG26BBBBB00860.37BB00
256df5_E_DG26_DG27BB2BB07700.27BB07
266df5_E_DG27_DC28B-ABA05650.27BA05
276df5_E_DC28_DA29A-BAB01350.20AB01
286df5_E_DA29_DG30BBBBB00580.55BB00
296df5_E_DG30_DG31BB2BB07860.23BB07
306df5_E_DG31_DA32BB1BB02510.31BB02
316df5_E_DA32_DA33BBBBB00430.35BB00
326df5_E_DA33_DG34BBBBB00860.14BB00
336df5_E_DG34_DC35B-ABA09300.40BA09
346df5_E_DC35_DA36AAAAA09330.42AA09

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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