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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS), pH 6.5

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016df8_D_DT1_DG2BB2BB07130.28BB07
026df8_D_DG2_DC3miBBB12620.45BB12
036df8_D_DC3_DT4NANNANT00.35BB16
046df8_D_DT4_DT5BBBBB01790.21BB01
056df8_D_DT5_DC6BBBBB00510.28BB00
066df8_D_DC6_DC7BBBBB01610.17BB01
076df8_D_DC7_DT8BBBBB00520.39BB00
086df8_D_DT8_DG9BB2BB07590.23BB07
096df8_D_DG9_DC10B-ABA05730.22BA05
106df8_D_DC10_DC11BBBBB01220.28BB01
116df8_D_DC11_DA12BB2BB07880.13BB07
126df8_D_DA12_DA13BBBBB00720.21BB00
136df8_D_DA13_DT14BBBBB00560.25BB00
146df8_D_DT14_DA15BBBBB00320.26BB00
156df8_D_DA15_DA16B12BB04750.22BB04
166df8_D_DA16_DC17miBBB15770.26BB15
176df8_D_DC17_DG18B12BB04640.27BB04
186df8_E_DC19_DG20NANNANT00.93BB12
196df8_E_DG20_DT21BBBBB00430.43BB00
206df8_E_DT21_DT22NANNANT00.35BA08
216df8_E_DT22_DA23BBBBB00320.21BB00
226df8_E_DA23_DT24BBBBB01790.21BB01
236df8_E_DT24_DT25BBBBB00650.22BB00
246df8_E_DT25_DG26BBBBB00600.34BB00
256df8_E_DG26_DG27BB2BB07460.29BB07
266df8_E_DG27_DC28BBBBB0160.32BB01
276df8_E_DC28_DA29A-BAB01350.20AB01
286df8_E_DA29_DG30BBBBB00340.58BB00
296df8_E_DG30_DG31BB2BB07630.28BB07
306df8_E_DG31_DA32miBBB15800.29BB15
316df8_E_DA32_DA33BBBBB00710.27BB00
326df8_E_DA33_DG34BBBBB00800.14BB00
336df8_E_DG34_DC35B-ABA09530.32BA09
346df8_E_DC35_DA36A-BAB05170.56AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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