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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Kaiso (ZBTB33) E535A zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016dfa_D_DT1_DG2BB2BB07740.27BB07
026dfa_D_DG2_DC3NANNANT00.37BB13
036dfa_D_DC3_DT4NANNANT00.38BB16
046dfa_D_DT4_DT5BBBBB01780.22BB01
056dfa_D_DT5_DC6BBBBB00390.33BB00
066dfa_D_DC6_DC7BBBBB01880.19BB01
076dfa_D_DC7_DT8BBBBB00380.40BB00
086dfa_D_DT8_DG9BB2BB07620.21BB07
096dfa_D_DG9_DC10B-ABA05880.22BA05
106dfa_D_DC10_DC11BBBBB01300.30BB01
116dfa_D_DC11_DA12BB2BB07880.14BB07
126dfa_D_DA12_DA13BBBBB00900.17BB00
136dfa_D_DA13_DT14BBBBB01630.17BB01
146dfa_D_DT14_DA15BBBBB01200.25BB01
156dfa_D_DA15_DA16BBBBB00700.19BB00
166dfa_D_DA16_DC17BBBBB00660.24BB00
176dfa_D_DC17_DG18miBBB10610.23BB10
186dfa_E_DC19_DG20BB2BB07440.30BB07
196dfa_E_DG20_DT21BBBBB00740.17BB00
206dfa_E_DT21_DT22BBBBB00740.16BB00
216dfa_E_DT22_DA23BBBBB00750.23BB00
226dfa_E_DA23_DT24BBBBB01830.25BB01
236dfa_E_DT24_DT25BBBBB01780.21BB01
246dfa_E_DT25_DG26BBBBB00830.37BB00
256dfa_E_DG26_DG27BB2BB07720.25BB07
266dfa_E_DG27_DC28B-ABA05590.28BA05
276dfa_E_DC28_DA29A-BAB01270.19AB01
286dfa_E_DA29_DG30BBBBB00630.53BB00
296dfa_E_DG30_DG31BB2BB07820.25BB07
306dfa_E_DG31_DA32BBBBB00870.16BB00
316dfa_E_DA32_DA33BBBBB00870.18BB00
326dfa_E_DA33_DG34BBBBB00830.14BB00
336dfa_E_DG34_DC35BBBBB00310.26BB00
346dfa_E_DC35_DA36B12BB04570.18BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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