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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Kaiso (ZBTB33) K539A zinc finger DNA binding domain in complex with the specific Kaiso binding sequence (KBS)

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016dfb_D_DT1_DG2BB2BB07510.29BB07
026dfb_D_DG2_DC3miBBB13230.34BB13
036dfb_D_DC3_DT4BB1BB16150.38BB16
046dfb_D_DT4_DT5B-ABA05760.14BA05
056dfb_D_DT5_DC6BBBBB01240.34BB01
066dfb_D_DC6_DC7BBBBB01760.22BB01
076dfb_D_DC7_DT8BBBBB00350.42BB00
086dfb_D_DT8_DG9BB2BB07640.21BB07
096dfb_D_DG9_DC10B-ABA05850.21BA05
106dfb_D_DC10_DC11BBBBB00110.32BB00
116dfb_D_DC11_DA12BB2BB07940.13BB07
126dfb_D_DA12_DA13BBBBB00920.16BB00
136dfb_D_DA13_DT14BBBBB01400.19BB01
146dfb_D_DT14_DA15BBBBB01350.28BB01
156dfb_D_DA15_DA16miBBB15810.25BB15
166dfb_D_DA16_DC17BBBBB00720.27BB00
176dfb_D_DC17_DG18miBBB12520.37BB12
186dfb_E_DC19_DG20B12BB04580.33BB04
196dfb_E_DG20_DT21BBBBB00830.15BB00
206dfb_E_DT21_DT22BBBBB01830.18BB01
216dfb_E_DT22_DA23BBBBB01670.23BB01
226dfb_E_DA23_DT24BBBBB01790.14BB01
236dfb_E_DT24_DT25BBBBB00630.23BB00
246dfb_E_DT25_DG26BBBBB00820.38BB00
256dfb_E_DG26_DG27BB2BB07760.27BB07
266dfb_E_DG27_DC28B-ABA05840.27BA05
276dfb_E_DC28_DA29A-BAB01420.20AB01
286dfb_E_DA29_DG30BBBBB00620.53BB00
296dfb_E_DG30_DG31BB2BB07880.24BB07
306dfb_E_DG31_DA32BBBBB00930.13BB00
316dfb_E_DA32_DA33BBBBB00930.16BB00
326dfb_E_DA33_DG34BBBBB00940.12BB00
336dfb_E_DG34_DC35BBBBB01660.19BB01
346dfb_E_DC35_DA36miBBB10330.23BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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