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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of the Corn aptamer in unliganded state

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016e80_A_G2_C3AAAAA00790.19AA00
026e80_A_C3_G4AAwAA01360.46AA01
036e80_A_G4_C5AAAAA08960.13AA08
046e80_A_C5_G6AAAAA00860.23AA00
056e80_A_G6_A7AAAAA00630.30AA00
066e80_A_A7_G8AAAAA08810.28AA08
076e80_A_G8_G9NANNANT00.38AA07
086e80_A_G9_A10AAAAA02590.29AA02
096e80_A_A10_A11NANNANT00.98OP29
106e80_A_A11_G12NANNANT00.55OP21
116e80_A_G12_G13BBBBB00410.38BB00
126e80_A_G13_A14NANNANT01.64BA16
136e80_A_A14_G15NANNANT00.92OP12
146e80_A_G15_G16AAwAA06220.25AA06
156e80_A_G16_U17AAAAA08660.48AA08
166e80_A_U17_C18A-BAB05810.23AB05
176e80_A_C18_U19NANNANT01.90OP19
186e80_A_U19_G20NANNANT00.89OP22
196e80_A_G20_A21NANNANT00.47AB01
206e80_A_A21_G22NANNANT01.02OP04
216e80_A_G22_G23A-BAB04680.20AB04
226e80_A_G23_A24NANNANT01.65OP19
236e80_A_A24_G25NANNANT01.67IC07
246e80_A_G25_G26AAAAA00670.16AA00
256e80_A_G26_U27AAAAA08680.35AA08
266e80_A_U27_C28A-BAB05810.24AB05
276e80_A_C28_A29NANNANT00.66OP15
286e80_A_A29_C30AAAAA00690.32AA00
296e80_A_C30_U31AAAAA08740.36AA08
306e80_A_U31_G32NANNANT02.45OP29
316e80_A_G32_C33AAAAA00790.12AA00
326e80_A_C33_G34AAwAA01690.29AA01
336e80_A_G34_C35AAwAA01490.32AA01
346e80_A_C35_C36AAAAA08930.15AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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