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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of the Corn aptamer in unliganded state

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016e80_A_G2_C3AAAAA00790.17AA00
026e80_A_C3_G4AA1AA01410.46AA01
036e80_A_G4_C5AAAAA08960.07AA08
046e80_A_C5_G6AAAAA00870.17AA00
056e80_A_G6_A7AAAAA00640.27AA00
066e80_A_A7_G8AAAAA08820.22AA08
076e80_A_G8_G9NANNANT00.38AA07
086e80_A_G9_A10AAAAA02590.29AA02
096e80_A_A10_A11NANNANT01.02OP13
106e80_A_A11_G12NANNANT00.56OP21
116e80_A_G12_G13BBBBB00420.28BB00
126e80_A_G13_A14NANNANT01.70BA16
136e80_A_A14_G15NANNANT00.92OP12
146e80_A_G15_G16NANNANT00.27AA06
156e80_A_G16_U17AAAAA08660.41AA08
166e80_A_U17_C18A-BAB05810.21AB05
176e80_A_C18_U19NANNANT01.90OP19
186e80_A_U19_G20NANNANT01.51BA17
196e80_A_G20_A21NANNANT00.80AB04
206e80_A_A21_G22NANNANT01.02OP04
216e80_A_G22_G23A-BAB04660.20AB04
226e80_A_G23_A24NANNANT01.65OP19
236e80_A_A24_G25NANNANT01.55IC04
246e80_A_G25_G26AAAAA00680.20AA00
256e80_A_G26_U27AAAAA08700.33AA08
266e80_A_U27_C28A-BAB05810.31AB05
276e80_A_C28_A29NANNANT00.60OP15
286e80_A_A29_C30AAAAA00690.25AA00
296e80_A_C30_U31AAAAA08750.32AA08
306e80_A_U31_G32NANNANT02.07OP14
316e80_A_G32_C33AAAAA00790.14AA00
326e80_A_C33_G34AA1AA01720.29AA01
336e80_A_G34_C35AA1AA01540.32AA01
346e80_A_C35_C36AAAAA08930.18AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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