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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of SRY.hcGAS-21bp dsDNA complex

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016edb_C_DC1_DG2BB1BB16760.33BB16
026edb_C_DG2_DA3NANNANT00.52BB07
036edb_C_DA3_DT4BBBBB00760.21BB00
046edb_C_DT4_DC5miBBB10840.15BB10
056edb_C_DC5_DC6B12BB04880.18BB04
066edb_C_DC6_DG7BBBBB00630.31BB00
076edb_C_DG7_DG8BBBBB00660.31BB00
086edb_C_DG8_DG9NANNANT00.54BA17
096edb_C_DG9_DA10BB1BB02510.28BB02
106edb_C_DA10_DT11BBBBB00700.35BB00
116edb_C_DT11_DC12BB1BB02440.34BB02
126edb_C_DC12_DT13BBBBB00510.28BB00
136edb_C_DT13_DA14B-ABA01260.44BA01
146edb_C_DA14_DA15NANNANT00.41AB03
156edb_C_DA15_DA16BBBBB00670.29BB00
166edb_C_DA16_DC17BBBBB00770.21BB00
176edb_C_DC17_DA18B-ABA08600.26BA08
186edb_C_DA18_DA19A-BAB04510.39AB04
196edb_C_DA19_DT20BB1BB02330.52BB02
206edb_C_DT20_DG21BB1BB11460.40BB11
216edb_D_DG2_DC3NANNANT00.64BA17
226edb_D_DC3_DA4NANNANT00.47AA09
236edb_D_DA4_DT5AAAAA04650.49AA04
246edb_D_DT5_DT6A-BAB05650.38AB05
256edb_D_DT6_DG7BBBBB00190.30BB00
266edb_D_DG7_DT8BBBBB00650.28BB00
276edb_D_DT8_DT9miBBB10920.17BB10
286edb_D_DT9_DT10BBBBB00500.37BB00
296edb_D_DT10_DA11miBBB10520.31BB10
306edb_D_DA11_DG12NANNANT00.33BA17
316edb_D_DG12_DA13BBBBB00600.31BB00
326edb_D_DA13_DT14BBBBB00710.20BB00
336edb_D_DT14_DC15BBBBB00900.16BB00
346edb_D_DC15_DC16miBBB10760.22BB10
356edb_D_DC16_DC17A-BAB03810.27AB03
366edb_D_DC17_DG18B12BB04830.17BB04
376edb_D_DG18_DG19BBBBB00710.24BB00
386edb_D_DG19_DA20miBBB15380.34BB15
396edb_D_DA20_DT21miBBB10350.43BB10
406edb_D_DT21_DC22AAAAA02560.50AA02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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