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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
hcGAS-16bp dsDNA complex

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016edc_B_DA1_DA2BBBBB01530.37BB01
026edc_B_DA2_DA3B-ABA08620.53BA08
036edc_B_DA3_DT4BBBBB01320.35BB01
046edc_B_DT4_DT5A-BAB03550.27AB03
056edc_B_DT5_DG6A-BAB03820.26AB03
066edc_B_DG6_DC7BBBBB0160.30BB01
076edc_B_DC7_DC8BBBBB00210.29BB00
086edc_B_DC8_DG9BBBBB00740.32BB00
096edc_B_DG9_DA10BB2BB07790.20BB07
106edc_B_DA10_DA11BBBBB00680.26BB00
116edc_B_DA11_DG12BBBBB00840.31BB00
126edc_B_DG12_DA13B12BB04840.27BB04
136edc_B_DA13_DC14BBBBB00200.28BB00
146edc_B_DC14_DG15BBBBB01760.32BB01
156edc_B_DG15_DA16B-ABA05690.29BA05
166edc_B_DA16_DA17AAAAA02290.37AA02
176edc_C_DT2_DT3NANNANT00.57AB03
186edc_C_DT3_DC4B-ABA05650.24BA05
196edc_C_DC4_DG5A-BAB01240.17AB01
206edc_C_DG5_DT6BBBBB01880.20BB01
216edc_C_DT6_DC7B-ABA01760.10BA01
226edc_C_DC7_DT8A-BAB03450.29AB03
236edc_C_DT8_DT9BBBBB00760.14BB00
246edc_C_DT9_DC10BBBBB00920.17BB00
256edc_C_DC10_DG11BBBBB00640.30BB00
266edc_C_DG11_DG12B12BB04910.18BB04
276edc_C_DG12_DC13BBBBB00570.36BB00
286edc_C_DC13_DA14BB2BB07800.27BB07
296edc_C_DA14_DA15B-ABA01500.38BA01
306edc_C_DA15_DT16NANNANT00.60AA06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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