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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of Type IIP restriction endonuclease PfoI with cognate DNA

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016eko_F_DC1_DG2B12BB04810.20BB04
026eko_F_DG2_DC3B-ABA05790.26BA05
036eko_F_DC3_DT4BBBBB01610.27BB01
046eko_F_DT4_DC5B-ABA01290.30BA01
056eko_F_DC5_DC6A-BAB01640.34AB01
066eko_F_DC6_DC7NANNANT01.70OP21
076eko_F_DC7_DG8NANNANT01.32OP21
086eko_F_DG8_DG9BB2BB07640.46BB07
096eko_F_DG9_DA10BBBBB00580.28BB00
106eko_F_DA10_DG11BBBBB01770.29BB01
116eko_F_DG11_DC12BBBBB00490.24BB00
126eko_F_DC12_DG13BBBBB00810.18BB00
136eko_F_DG13_DT14BBBBB00890.17BB00
146eko_E_DC1_DG2BBBBB00650.33BB00
156eko_E_DG2_DC3B-ABA05540.28BA05
166eko_E_DC3_DT4BBBBB01420.29BB01
176eko_E_DT4_DC5B-ABA08460.41BA08
186eko_E_DC5_DC6AAAAA02550.35AA02
196eko_E_DC6_DC7NANNANT01.73OP17
206eko_E_DC7_DG8NANNANT01.40OP21
216eko_E_DG8_DG9BB2BB07590.43BB07
226eko_E_DG9_DA10B12BB04490.21BB04
236eko_E_DA10_DG11BBBBB01680.32BB01
246eko_E_DG11_DC12BBBBB01760.21BB01
256eko_E_DC12_DG13BBBBB00910.15BB00
266eko_E_DG13_DT14B-ABA05330.25BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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