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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
The cytotoxic [Pt(H2bapbpy)] platinum complex interacting with the CGTACG hexamer

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016f3c_B_DC7_DG8NANNANT02.31OP06
026f3c_B_DG8_DT9A-BAB01100.34AB01
036f3c_B_DT9_DA10miBBB15790.25BB15
046f3c_B_DA10_DC11miBBB15270.27BB15
056f3c_B_DC11_DG12NANNANT01.33BB00
066f3c_D_DC7_DG8NANNANT00.83OP21
076f3c_D_DG8_DT9NANNANT00.74BB16
086f3c_D_DT9_DA10BB1BB17760.20BB17
096f3c_D_DA10_DC11B12BB04520.42BB04
106f3c_D_DC11_DG12NANNANT01.24BB04
116f3c_C_DG2_DT3NANNANT00.51BB17
126f3c_C_DT3_DA4NANNANT00.47BB02
136f3c_C_DA4_DC5BBBBB00350.38BB00
146f3c_C_DC5_DG6NANNANT00.57IC04
156f3c_A_DG2_DT3B12BB04370.46BB04
166f3c_A_DT3_DA4miBBB10410.20BB10
176f3c_A_DA4_DC5B-ABA05390.28BA05
186f3c_A_DC5_DG6NANNANT00.52IC04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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