Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

The animal-like Cryptochrome from Chlamydomonas reinhardtii in complex with 6-4 DNA

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016fn0_C_DC1_DA2NANNANT00.83BB11
026fn0_C_DA2_DG3BBwBB11110.45BB11
036fn0_C_DG3_DC4NANNANT00.41BB10
046fn0_C_DC4_DG5miBBB14390.36BB14
056fn0_C_DG5_DG6NANNANT00.64BB17
066fn0_C_DG6_64T7NANNANT00.77OP17
076fn0_C_64T7_5PY8NANNANT00.73AB04
086fn0_C_5PY8_DG9NANNANT00.65OP30
096fn0_C_DG9_DC10B-ABA05810.18BA05
106fn0_C_DC10_DC11A-BAB03550.34AB03
116fn0_C_DC11_DG12BBBBB00860.16BB00
126fn0_C_DG12_DT13BBBBB01600.23BB01
136fn0_C_DT13_DG14miBBB10450.22BB10
146fn0_D_DC1_DA2BBBBB00260.28BB00
156fn0_D_DA2_DC3B-ABA08700.27BA08
166fn0_D_DC3_DG4A-BAB02450.40AB02
176fn0_D_DG4_DG5B-ABA05130.34BA05
186fn0_D_DG5_DC6NANNANT00.40AB02
196fn0_D_DC6_DA7NANNANT00.88AB04
206fn0_D_DA7_DA8miBBB12750.27BB12
216fn0_D_DA8_DC9NANNANT01.00IC03
226fn0_D_DC9_DC10BBBBB00400.36BB00
236fn0_D_DC10_DG11BB2BB07760.20BB07
246fn0_D_DG11_DC12BBBBB00840.17BB00
256fn0_D_DC12_DT13B-ABA08750.36BA08
266fn0_D_DT13_DG14NANNANT00.76IC01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N