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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
DNA binding domain of restriction endonuclease McrBC in complex with 5-formylcytosine DNA

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016gce_D_DG.A2_DC.A3NANNANT00.30BB16
026gce_D_DG.B2_DC.B3BB1BB16180.55BB16
036gce_D_DC.A3_DT.A4BBBBB00800.24BB00
046gce_D_DC.B3_DT.B4B-ABA05610.23BA05
056gce_D_DT.A4_DA.A5B12BB04800.19BB04
066gce_D_DT.B4_DA.B5BBBBB00180.51BB00
076gce_D_DA.A5_5FC.A6NANNANT00.46OP17
086gce_D_DA.B5_5FC.B6NANNANT00.45OP17
096gce_D_5FC.A6_DC.A7NANNANT01.04OP13
106gce_D_5FC.B6_DC.B7NANNANT01.06OP13
116gce_D_DC.A7_DG.A8A-BAB01190.37AB01
126gce_D_DC.B7_DG.B8A-BAB01400.34AB01
136gce_D_DG.A8_DG.A9B-ABA01410.34BA01
146gce_D_DG.B8_DG.B9B-ABA01490.31BA01
156gce_D_DG.A9_DT.A10A-BAB01240.40AB01
166gce_D_DG.B9_DT.B10A-BAB01140.44AB01
176gce_D_DT.A10_DC.A11B-ABA10890.27BA10
186gce_D_DT.B10_DC.B11NANNANT00.40BA10
196gce_D_DC.A11_DT.A12A-BAB05670.24AB05
206gce_D_DC.B11_DT.B12A-BAB01480.30AB01
216gce_D_DT.A12_DC.A13B-ABA05370.36BA05
226gce_D_DT.B12_DC.B13BBBBB00860.20BB00
236gce_C_DG.A2_DA.A3BBBBB00630.31BB00
246gce_C_DG.B2_DA.B3NANNANT00.25BB16
256gce_C_DA.A3_DG.A4BBBBB00820.24BB00
266gce_C_DA.B3_DG.B4BBBBB00780.24BB00
276gce_C_DG.A4_DA.A5B12BB04700.24BB04
286gce_C_DG.B4_DA.B5B12BB04770.20BB04
296gce_C_DA.A5_DC.A6NANNANT00.43OP17
306gce_C_DA.B5_DC.B6NANNANT00.49OP17
316gce_C_DC.A6_DC.A7NANNANT01.07OP13
326gce_C_DC.B6_DC.B7NANNANT01.06OP13
336gce_C_DC.A7_DG.A8A-BAB01440.34AB01
346gce_C_DC.B7_DG.B8A-BAB01520.32AB01
356gce_C_DG.A8_DG.A9B-ABA01460.31BA01
366gce_C_DG.B8_DG.B9B-ABA01540.30BA01
376gce_C_DG.A9_DT.A10NANNANT00.55AB04
386gce_C_DG.B9_DT.B10A-BAB01150.43AB01
396gce_C_DT.A10_DA.A11NANNANT00.33BA10
406gce_C_DT.B10_DA.B11NANNANT00.38BA10
416gce_C_DA.A11_DG.A12A-BAB01570.25AB01
426gce_C_DA.B11_DG.B12A-BAB01460.28AB01
436gce_C_DG.A12_DC.A13BBBBB00640.29BB00
446gce_C_DG.B12_DC.B13B-ABA05200.39BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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