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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Holliday Junctions formed from Telomeric DNA

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016gds_A_DC1_DT2BB1BB11510.32BB11
026gds_A_DT2_DA3BBBBB00100.44BB00
036gds_A_DA3_DA4BBBBB00480.37BB00
046gds_A_DA4_DC5NANNANT00.93OP12
056gds_A_DC5_DC6NANNANT00.63AA08
066gds_A_DC6_DC7BB1BB16210.49BB16
076gds_A_DC7_DT8miBBB10710.27BB10
086gds_A_DT8_DA9BBBBB00190.53BB00
096gds_A_DA9_DA10B-ABA13320.45BA13
106gds_B_DT1_DT2BBBBB00820.36BB00
116gds_B_DT2_DA3NANNANT00.92BB13
126gds_B_DA3_DG4NANNANT00.39BB17
136gds_B_DG4_DG5NANNANT00.62AA01
146gds_B_DG5_DG6BB1BB03400.23BB03
156gds_B_DG6_DT7NANNANT00.78BB13
166gds_B_DT7_DT8NANNANT00.78AB02
176gds_B_DT8_DA9NANNANT00.39BA17
186gds_B_DA9_DG10BB1BB16250.55BB16
196gds_C_DC1_DT2A-BAB03540.43AB03
206gds_C_DT2_DA3BBBBB00770.25BB00
216gds_C_DA3_DA4BBBBB01220.27BB01
226gds_C_DA4_DC5NANNANT00.93OP12
236gds_C_DC5_DC6NANNANT00.67AA03
246gds_C_DC6_DC7A-BAB01660.39AB01
256gds_C_DC7_DT8miBBB10550.41BB10
266gds_C_DT8_DA9NANNANT00.44AB02
276gds_C_DA9_DA10NANNANT00.50BB08
286gds_D_DT1_DT2BB1BB02350.37BB02
296gds_D_DT2_DA3B12BB04290.34BB04
306gds_D_DA3_DG4BBBBB00270.28BB00
316gds_D_DG4_DG5B12BB04310.29BB04
326gds_D_DG5_DG6NANNANT00.37BB03
336gds_D_DG6_DT7BB1BB16470.37BB16
346gds_D_DT7_DT8BBBBB00610.24BB00
356gds_D_DT8_DA9B12BB04780.18BB04
366gds_D_DA9_DG10BBBBB00270.28BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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