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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure

Results of the assignment of 210 detected steps in 10 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0016gh0-m10_A_DG1_DG2SYNBBS1810.22BBS1
0026gh0-m1_A_DG1_DG2SYNBBS1890.25BBS1
0036gh0-m2_A_DG1_DG2SYNBBS1840.29BBS1
0046gh0-m3_A_DG1_DG2SYNBBS1880.25BBS1
0056gh0-m4_A_DG1_DG2SYNBBS1760.27BBS1
0066gh0-m5_A_DG1_DG2SYNBBS1750.26BBS1
0076gh0-m6_A_DG1_DG2NANNANT00.61BBS1
0086gh0-m7_A_DG1_DG2SYNBBS1810.29BBS1
0096gh0-m8_A_DG1_DG2NANNANT00.52BA10
0106gh0-m9_A_DG1_DG2SYNBBS1730.27BBS1
0116gh0-m10_A_DG2_DC3NANNANT00.57OP14
0126gh0-m1_A_DG2_DC3NANNANT01.48OP18
0136gh0-m2_A_DG2_DC3NANNANT00.61OP14
0146gh0-m3_A_DG2_DC3NANNANT01.49OP18
0156gh0-m4_A_DG2_DC3NANNANT00.87OP09
0166gh0-m5_A_DG2_DC3NANNANT01.22OP14
0176gh0-m6_A_DG2_DC3NANNANT01.59OP18
0186gh0-m7_A_DG2_DC3NANNANT01.10OP14
0196gh0-m8_A_DG2_DC3NANNANT01.47OP07
0206gh0-m9_A_DG2_DC3NANNANT01.64OP18
0216gh0-m10_A_DC3_DG4NANNANT01.46BB08
0226gh0-m1_A_DC3_DG4BBBBB00640.56BB00
0236gh0-m2_A_DC3_DG4NANNANT00.24IC06
0246gh0-m3_A_DC3_DG4NANNANT01.02BA08
0256gh0-m4_A_DC3_DG4BBBBB00370.54BB00
0266gh0-m5_A_DC3_DG4NANNANT00.55BB16
0276gh0-m6_A_DC3_DG4BBBBB00260.58BB00
0286gh0-m7_A_DC3_DG4BBBBB00390.74BB00
0296gh0-m8_A_DC3_DG4NANNANT01.00BA08
0306gh0-m9_A_DC3_DG4B-ABA05330.49BA05
0316gh0-m10_A_DG4_DA5NANNANT01.13IC03
0326gh0-m1_A_DG4_DA5NANNANT01.41IC03
0336gh0-m2_A_DG4_DA5NANNANT01.32IC03
0346gh0-m3_A_DG4_DA5NANNANT01.12IC03
0356gh0-m4_A_DG4_DA5NANNANT01.27IC03
0366gh0-m5_A_DG4_DA5NANNANT01.17BB02
0376gh0-m6_A_DG4_DA5NANNANT00.84OP12
0386gh0-m7_A_DG4_DA5NANNANT00.73OP20
0396gh0-m8_A_DG4_DA5NANNANT01.04OP12
0406gh0-m9_A_DG4_DA5NANNANT00.84IC03
0416gh0-m10_A_DA5_DG6NANNANT01.19ZZ1S
0426gh0-m1_A_DA5_DG6NANNANT01.85AB2S
0436gh0-m2_A_DA5_DG6NANNANT01.86AB2S
0446gh0-m3_A_DA5_DG6NANNANT01.01ZZ2S
0456gh0-m4_A_DA5_DG6NANNANT00.83ZZ2S
0466gh0-m5_A_DA5_DG6NANNANT01.23BB20
0476gh0-m6_A_DA5_DG6NANNANT01.36ZZ2S
0486gh0-m7_A_DA5_DG6NANNANT01.83AB2S
0496gh0-m8_A_DA5_DG6NANNANT01.08ZZ2S
0506gh0-m9_A_DA5_DG6NANNANT00.91ZZ2S
0516gh0-m10_A_DG6_DG7NANNANT00.55AB02
0526gh0-m1_A_DG6_DG7NANNANT00.45AB02
0536gh0-m2_A_DG6_DG7NANNANT00.62BBS1
0546gh0-m3_A_DG6_DG7SYNBBS1430.40BBS1
0556gh0-m4_A_DG6_DG7SYNBBS1640.35BBS1
0566gh0-m5_A_DG6_DG7NANNANT00.81BB08
0576gh0-m6_A_DG6_DG7SYNBBS1820.30BBS1
0586gh0-m7_A_DG6_DG7NANNANT00.44AB02
0596gh0-m8_A_DG6_DG7SYNBBS1570.51BBS1
0606gh0-m9_A_DG6_DG7NANNANT00.56BBS1
0616gh0-m10_A_DG7_DA8NANNANT01.78OP09
0626gh0-m1_A_DG7_DA8NANNANT01.82OP09
0636gh0-m2_A_DG7_DA8NANNANT01.91OP09
0646gh0-m3_A_DG7_DA8NANNANT01.20OP14
0656gh0-m4_A_DG7_DA8NANNANT01.65OP04
0666gh0-m5_A_DG7_DA8NANNANT01.33OP14
0676gh0-m6_A_DG7_DA8NANNANT01.75OP04
0686gh0-m7_A_DG7_DA8NANNANT01.46OP14
0696gh0-m8_A_DG7_DA8NANNANT01.82OP04
0706gh0-m9_A_DG7_DA8NANNANT01.50OP14
0716gh0-m10_A_DA8_DG9NANNANT01.02IC01
0726gh0-m1_A_DA8_DG9NANNANT00.94BB03
0736gh0-m2_A_DA8_DG9NANNANT00.91BB03
0746gh0-m3_A_DA8_DG9NANNANT01.05IC05
0756gh0-m4_A_DA8_DG9NANNANT00.75BA05
0766gh0-m5_A_DA8_DG9NANNANT00.93IC05
0776gh0-m6_A_DA8_DG9NANNANT00.85BB03
0786gh0-m7_A_DA8_DG9NANNANT00.84BB03
0796gh0-m8_A_DA8_DG9NANNANT00.90BB03
0806gh0-m9_A_DA8_DG9NANNANT01.06BB08
0816gh0-m10_A_DG9_DG10NANNANT01.23BB02
0826gh0-m1_A_DG9_DG10NANNANT01.42OP20
0836gh0-m2_A_DG9_DG10NANNANT00.74IC03
0846gh0-m3_A_DG9_DG10NANNANT00.77IC03
0856gh0-m4_A_DG9_DG10NANNANT00.71IC03
0866gh0-m5_A_DG9_DG10NANNANT01.03BB02
0876gh0-m6_A_DG9_DG10NANNANT00.95IC03
0886gh0-m7_A_DG9_DG10NANNANT00.85IC03
0896gh0-m8_A_DG9_DG10NANNANT00.77IC03
0906gh0-m9_A_DG9_DG10NANNANT00.91IC03
0916gh0-m10_A_DG10_DG11NANNANT01.06BB2S
0926gh0-m1_A_DG10_DG11NANNANT00.69AB1S
0936gh0-m2_A_DG10_DG11NANNANT00.53BB2S
0946gh0-m3_A_DG10_DG11NANNANT00.75AB1S
0956gh0-m4_A_DG10_DG11NANNANT00.75AB1S
0966gh0-m5_A_DG10_DG11NANNANT00.53BB2S
0976gh0-m6_A_DG10_DG11NANNANT01.09BB2S
0986gh0-m7_A_DG10_DG11NANNANT01.09BB2S
0996gh0-m8_A_DG10_DG11NANNANT00.58BB2S
1006gh0-m9_A_DG10_DG11NANNANT00.94AB02
1016gh0-m10_A_DG11_DG12NANNANT00.57BB02
1026gh0-m1_A_DG11_DG12NANNANT00.58BBS1
1036gh0-m2_A_DG11_DG12SYNBBS1720.47BBS1
1046gh0-m3_A_DG11_DG12NANNANT00.53BBS1
1056gh0-m4_A_DG11_DG12NANNANT00.67AA01
1066gh0-m5_A_DG11_DG12NANNANT00.50BBS1
1076gh0-m6_A_DG11_DG12NANNANT00.63AA01
1086gh0-m7_A_DG11_DG12SYNBBS1630.50BBS1
1096gh0-m8_A_DG11_DG12NANNANT00.56BBS1
1106gh0-m9_A_DG11_DG12NANNANT00.80BBS1
1116gh0-m10_A_DG12_DC13NANNANT00.96OP09
1126gh0-m1_A_DG12_DC13NANNANT01.59OP17
1136gh0-m2_A_DG12_DC13NANNANT01.51OP17
1146gh0-m3_A_DG12_DC13NANNANT00.56OP14
1156gh0-m4_A_DG12_DC13NANNANT01.21OP13
1166gh0-m5_A_DG12_DC13NANNANT02.01OP17
1176gh0-m6_A_DG12_DC13NANNANT01.64OP18
1186gh0-m7_A_DG12_DC13NANNANT01.44BB15
1196gh0-m8_A_DG12_DC13NANNANT01.31OP17
1206gh0-m9_A_DG12_DC13NANNANT01.26OP09
1216gh0-m10_A_DC13_DG14NANNANT00.94OP13
1226gh0-m1_A_DC13_DG14NANNANT01.04OP01
1236gh0-m2_A_DC13_DG14NANNANT00.42OP13
1246gh0-m3_A_DC13_DG14NANNANT00.56OP13
1256gh0-m4_A_DC13_DG14NANNANT01.16BB20
1266gh0-m5_A_DC13_DG14NANNANT01.53OP18
1276gh0-m6_A_DC13_DG14NANNANT00.75OP13
1286gh0-m7_A_DC13_DG14NANNANT01.64BB11
1296gh0-m8_A_DC13_DG14NANNANT01.48BA08
1306gh0-m9_A_DC13_DG14NANNANT01.13OP06
1316gh0-m10_A_DG14_DT15NANNANT00.76AA02
1326gh0-m1_A_DG14_DT15NANNANT00.51OP10
1336gh0-m2_A_DG14_DT15NANNANT01.05AA12
1346gh0-m3_A_DG14_DT15NANNANT01.06AA12
1356gh0-m4_A_DG14_DT15NANNANT00.64OP07
1366gh0-m5_A_DG14_DT15NANNANT01.53BB08
1376gh0-m6_A_DG14_DT15NANNANT00.67OP15
1386gh0-m7_A_DG14_DT15NANNANT01.05OP13
1396gh0-m8_A_DG14_DT15NANNANT01.68IC03
1406gh0-m9_A_DG14_DT15NANNANT01.73IC03
1416gh0-m10_A_DT15_DG16NANNANT00.59ZZ2S
1426gh0-m1_A_DT15_DG16ZZZZZ2S670.35ZZ2S
1436gh0-m2_A_DT15_DG16NANNANT00.97ZZ2S
1446gh0-m3_A_DT15_DG16ZZZZZ2S350.36ZZ2S
1456gh0-m4_A_DT15_DG16ZZZZZ2S380.42ZZ2S
1466gh0-m5_A_DT15_DG16NANNANT01.49OP10
1476gh0-m6_A_DT15_DG16ZZZZZ2S280.47ZZ2S
1486gh0-m7_A_DT15_DG16NANNANT00.55ZZ1S
1496gh0-m8_A_DT15_DG16NANNANT01.09OP15
1506gh0-m9_A_DT15_DG16NANNANT01.07OP15
1516gh0-m10_A_DG16_DG17SYNBBS1620.39BBS1
1526gh0-m1_A_DG16_DG17SYNBBS1880.33BBS1
1536gh0-m2_A_DG16_DG17SYNBBS1810.34BBS1
1546gh0-m3_A_DG16_DG17SYNBBS1880.30BBS1
1556gh0-m4_A_DG16_DG17NANNANT00.61AB02
1566gh0-m5_A_DG16_DG17SYNBBS1440.55BBS1
1576gh0-m6_A_DG16_DG17SYNBBS1380.51BBS1
1586gh0-m7_A_DG16_DG17NANNANT00.59AB02
1596gh0-m8_A_DG16_DG17NANNANT00.53AB02
1606gh0-m9_A_DG16_DG17NANNANT00.52AB02
1616gh0-m10_A_DG17_DC18NANNANT00.70AA01
1626gh0-m1_A_DG17_DC18B-ABA09770.33BA09
1636gh0-m2_A_DG17_DC18NANNANT00.57AA01
1646gh0-m3_A_DG17_DC18B-ABA09750.35BA09
1656gh0-m4_A_DG17_DC18B-ABA09790.32BA09
1666gh0-m5_A_DG17_DC18NANNANT00.70BA08
1676gh0-m6_A_DG17_DC18NANNANT00.61BA10
1686gh0-m7_A_DG17_DC18B-ABA09300.52BA09
1696gh0-m8_A_DG17_DC18NANNANT00.52AA01
1706gh0-m9_A_DG17_DC18B-ABA09760.26BA09
1716gh0-m10_A_DC18_DC19NANNANT01.60AA12
1726gh0-m1_A_DC18_DC19NANNANT01.64IC01
1736gh0-m2_A_DC18_DC19NANNANT01.01OP04
1746gh0-m3_A_DC18_DC19NANNANT01.86IC01
1756gh0-m4_A_DC18_DC19NANNANT01.12OP04
1766gh0-m5_A_DC18_DC19NANNANT01.26ZZ01
1776gh0-m6_A_DC18_DC19NANNANT01.03OP04
1786gh0-m7_A_DC18_DC19NANNANT01.14OP04
1796gh0-m8_A_DC18_DC19NANNANT01.51IC03
1806gh0-m9_A_DC18_DC19NANNANT01.67IC01
1816gh0-m10_A_DC19_DG20NANNANT00.81AB02
1826gh0-m1_A_DC19_DG20NANNANT01.09AA01
1836gh0-m2_A_DC19_DG20NANNANT00.83AA01
1846gh0-m3_A_DC19_DG20NANNANT00.94AB02
1856gh0-m4_A_DC19_DG20NANNANT00.88AA01
1866gh0-m5_A_DC19_DG20NANNANT00.90AB02
1876gh0-m6_A_DC19_DG20NANNANT00.56BB03
1886gh0-m7_A_DC19_DG20NANNANT00.56BB03
1896gh0-m8_A_DC19_DG20NANNANT00.96BA10
1906gh0-m9_A_DC19_DG20NANNANT00.82BB03
1916gh0-m10_A_DG20_DG21NANNANT01.34OP06
1926gh0-m1_A_DG20_DG21NANNANT00.74OP18
1936gh0-m2_A_DG20_DG21NANNANT00.60OP09
1946gh0-m3_A_DG20_DG21NANNANT01.87OP17
1956gh0-m4_A_DG20_DG21NANNANT01.48OP06
1966gh0-m5_A_DG20_DG21NANNANT00.76AA13
1976gh0-m6_A_DG20_DG21NANNANT00.92OP18
1986gh0-m7_A_DG20_DG21NANNANT00.64OP14
1996gh0-m8_A_DG20_DG21NANNANT01.46OP06
2006gh0-m9_A_DG20_DG21NANNANT00.67OP18
2016gh0-m10_A_DG21_DC22NANNANT02.02OP10
2026gh0-m1_A_DG21_DC22NANNANT01.56OP17
2036gh0-m2_A_DG21_DC22NANNANT01.53OP20
2046gh0-m3_A_DG21_DC22NANNANT02.19OP10
2056gh0-m4_A_DG21_DC22NANNANT02.13OP10
2066gh0-m5_A_DG21_DC22NANNANT01.12AA01
2076gh0-m6_A_DG21_DC22NANNANT01.55OP17
2086gh0-m7_A_DG21_DC22OPNOP20380.72OP20
2096gh0-m8_A_DG21_DC22NANNANT02.26OP10
2106gh0-m9_A_DG21_DC22NANNANT01.43OP17

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N