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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Intercalation of [Ru(TAP)2(11-Br-dppz)]2+ bound to d(TCGGCGCCGA)2

Results of the assignment of 9 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
16gld_B_DT1_DC2NANNANT00.59AA02
26gld_B_DC2_DG3AAAAA02860.24AA02
36gld_B_DG3_DG4A-BAB01280.46AB01
46gld_B_DG4_DC5B-ABA08760.28BA08
56gld_B_DC5_DG6A-BAB01630.33AB01
66gld_B_DG6_DC7B-ABA01540.23BA01
76gld_B_DC7_DC8NANNANT00.39AB04
86gld_B_DC8_DG9A-BAB03510.30AB03
96gld_B_DG9_DA10NANNANT01.93IC05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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