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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Racemic crystal structure of A-DNA duplex formed from d(CCCGGG) in space group P21/n

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016gn3_A_DC1_DC2AAAAA00910.23AA00
026gn3_A_DC2_DC3AAAAA00730.25AA00
036gn3_A_DC3_DG4AAwAA01930.19AA01
046gn3_A_DG4_DG5AAAAA00850.20AA00
056gn3_A_DG5_DG6AAAAA00910.12AA00
066gn3_B_DC7_DC8AAAAA00960.16AA00
076gn3_B_DC8_DC9AAAAA00930.15AA00
086gn3_B_DC9_DG10AAAAA00740.17AA00
096gn3_B_DG10_DG11AAAAA04930.25AA04
106gn3_B_DG11_DG12AAAAA00840.17AA00
116gn3_C_DC1_DC2AAAAA00950.15AA00
126gn3_C_DC2_DC3AAAAA00930.17AA00
136gn3_C_DC3_DG4AAwAA10320.37AA10
146gn3_C_DG4_DG5AAwAA01690.29AA01
156gn3_C_DG5_DG6AAAAA00870.18AA00
166gn3_D_DC7_DC8AAAAA00970.14AA00
176gn3_D_DC8_DC9AAAAA00920.18AA00
186gn3_D_DC9_DG10AAAAA04150.20AA04
196gn3_D_DG10_DG11AAAAA04920.21AA04
206gn3_D_DG11_DG12AAAAA00910.12AA00
216gn3_E_DC1_DC2AAAAA00950.14AA00
226gn3_E_DC2_DC3AAAAA00920.16AA00
236gn3_E_DC3_DG4AAwAA10330.33AA10
246gn3_E_DG4_DG5AAAAA04890.23AA04
256gn3_E_DG5_DG6AAAAA00740.23AA00
266gn3_F_DC7_DC8AAAAA00920.19AA00
276gn3_F_DC8_DC9AAAAA00930.17AA00
286gn3_F_DC9_DG10AAwAA10300.37AA10
296gn3_F_DG10_DG11AAAAA00840.18AA00
306gn3_F_DG11_DG12AAAAA00840.16AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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