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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
TdT chimera (Loop1 of pol mu) - Ternary complex with 1-nt gapped DNA substrate

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016go5_H_DC1_DG2BBBBB00660.23BB00
026go5_H_DG2_DC3BBBBB00600.21BB00
036go5_H_DC3_DT4BBBBB00740.14BB00
046go5_H_DT4_DG5BBBBB00730.33BB00
056go5_H_DG5_DG6NANNANT01.19OP21
066go5_H_DG6_DC7NANNANT00.35BA10
076go5_H_DC7_DA8A-BAB05320.30AB05
086go5_H_DA8_DA9miBBB10480.24BB10
096go5_H_DA9_DA10B12BB04870.16BB04
106go5_H_DA10_DC11BB1BB11380.39BB11
116go5_H_DC11_DA12BBBBB00140.60BB00
126go5_F_DT1_DG2BB2BB07300.33BB07
136go5_F_DG2_DT3BBBBB01390.24BB01
146go5_F_DT3_DT4BBBBB01550.24BB01
156go5_F_DT4_DT5NANNANT00.36BA05
166go5_F_DT5_DG6AAAAA00430.27AA00
176go5_G_DC2_DA3BBBBB00780.14BB00
186go5_G_DA3_DG4BBBBB00810.16BB00
196go5_G_DG4_DC5BBBBB00550.21BB00
206go5_G_DC5_DG6B12BB04170.29BB04
216go5_L_DT1_DG2NANNANT00.61IC06
226go5_L_DG2_DT3BBBBB01190.23BB01
236go5_L_DT3_DT4B-ABA05600.21BA05
246go5_L_DT4_DT5NANNANT00.33BA05
256go5_L_DT5_DG6AAAAA00430.27AA00
266go5_N_DC1_DG2BBBBB00670.23BB00
276go5_N_DG2_DC3BBBBB00640.21BB00
286go5_N_DC3_DT4BBBBB00760.15BB00
296go5_N_DT4_DG5BBBBB00720.34BB00
306go5_N_DG5_DG6NANNANT01.22OP21
316go5_N_DG6_DC7NANNANT00.47BB03
326go5_N_DC7_DA8A-BAB05430.30AB05
336go5_N_DA8_DA9miBBB10480.24BB10
346go5_N_DA9_DA10B12BB04880.17BB04
356go5_N_DA10_DC11BBBBB00780.35BB00
366go5_N_DC11_DA12NANNANT00.79BB10
376go5_M_DC2_DA3BBBBB00810.15BB00
386go5_M_DA3_DG4BBBBB00910.16BB00
396go5_M_DG4_DC5BBBBB00770.23BB00
406go5_M_DC5_DG6B12BB04120.41BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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