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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
TdT chimera (Loop1 of pol mu) - ternary complex with downstream dsDNA

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016go6_G_DT1_DT2B-ABA10200.39BA10
026go6_G_DT2_DT3A-BAB01210.35AB01
036go6_G_DT3_DT4BBBBB01570.18BB01
046go6_G_DT4_DT5BBBBB00650.23BB00
056go6_G_DT5_DG6miBBB10590.19BB10
066go6_G_DG6_DG7B12BB05620.34BB05
076go6_F_DT1_DT2BBBBB01510.19BB01
086go6_F_DT2_DT3BBBBB01860.15BB01
096go6_F_DT3_DT4BBBBB01630.20BB01
106go6_F_DT4_DT5BBBBB01650.31BB01
116go6_F_DT5_DG6NANNANT01.31OP21
126go6_F_DG6_DG7NANNANT01.16BB2S
136go6_E_DA1_DA2BBBBB00730.33BB00
146go6_E_DA2_DA3miBBB12820.22BB12
156go6_E_DA3_DA4NANNANT00.56BB03
166go6_E_DA4_DA5miBBB15750.32BB15

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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