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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
TdT chimera (Loop1 of pol mu) - full DNA synapsis complex

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016go7_F_DA1_DA2BBBBB00630.23BB00
026go7_F_DA2_DA3NANNANT00.42BA05
036go7_F_DA3_DA4A-BAB03700.48AB03
046go7_F_DA4_DA5miBBB12610.28BB12
056go7_E_DT1_DT2A-BAB05300.22AB05
066go7_E_DT2_DT3BBBBB00650.21BB00
076go7_E_DT3_DT4B-ABA01130.20BA01
086go7_E_DT4_DT5AAAAA02790.48AA02
096go7_E_DT5_DG6AAAAA02690.32AA02
106go7_H_DT1_DT2A-BAB05390.21AB05
116go7_H_DT2_DT3BBBBB00630.21BB00
126go7_H_DT3_DT4BBBBB00500.24BB00
136go7_H_DT4_DT5BBBBB00210.37BB00
146go7_H_DT5_DG6NANNANT01.29OP21
156go7_G_DA1_DA2BBBBB00480.33BB00
166go7_G_DA2_DA3miBBB12700.25BB12
176go7_G_DA3_DA4NANNANT00.64BB03
186go7_G_DA4_DA5BBBBB00800.27BB00
196go7_I_DT1_DT2BBBBB00390.40BB00
206go7_I_DT2_DT3B-ABA13590.27BA13
216go7_I_DT3_DT4A-BAB04500.36AB04
226go7_I_DT4_DT5BBBBB00710.20BB00
236go7_I_DT5_DG6NANNANT00.61BB02
246go7_J_DT1_DT2B-ABA08610.32BA08
256go7_J_DT2_DT3A-BAB05410.20AB05
266go7_J_DT3_DT4BBBBB01510.18BB01
276go7_J_DT4_DT5BBBBB01540.26BB01
286go7_J_DT5_DG6BBBBB00130.37BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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