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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
TFAM in Complex with Site-Y

Results of the assignment of 177 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0016hb4_B_DC1_DT2B-ABA05170.41BA05
0026hb4_B_DT2_DG3AAAAA09490.39AA09
0036hb4_B_DG3_DT4AAAAA02280.42AA02
0046hb4_B_DT4_DG5A-BAB03510.39AB03
0056hb4_B_DG5_DC6NANNANT00.56BB08
0066hb4_B_DC6_DA7BB2BB07180.42BB07
0076hb4_B_DA7_DG8miBBB10670.35BB10
0086hb4_B_DG8_DA9miBBB10490.31BB10
0096hb4_B_DA9_DC10A-BAB03810.34AB03
0106hb4_B_DC10_DA11B12BB04530.23BB04
0116hb4_B_DA11_DT12BBBBB00170.24BB00
0126hb4_B_DT12_DT13B-ABA05630.37BA05
0136hb4_B_DT13_DC14AAAAA02650.32AA02
0146hb4_B_DC14_DA15NANNANT00.51IC03
0156hb4_B_DA15_DA16BBBBB00730.23BB00
0166hb4_B_DA16_DT17BBBBB00710.28BB00
0176hb4_B_DT17_DT18BBBBB00320.28BB00
0186hb4_B_DT18_DG19BBBBB00150.64BB00
0196hb4_B_DG19_DT20BBBBB00640.26BB00
0206hb4_B_DT20_DT21B12BB04350.52BB04
0216hb4_B_DT21_DA22BBBBB00560.33BB00
0226hb4_C_DT1_DA2BB2BB07710.16BB07
0236hb4_C_DA2_DA3BBBBB00800.18BB00
0246hb4_C_DA3_DC4BBBBB00730.22BB00
0256hb4_C_DC4_DA5BBBBB00790.21BB00
0266hb4_C_DA5_DA6BBBBB00910.17BB00
0276hb4_C_DA6_DT7B-ABA13370.28BA13
0286hb4_C_DT7_DT8AAAAA02260.39AA02
0296hb4_C_DT8_DG9AAAAA0070.49AA00
0306hb4_C_DG9_DA10A-BAB01240.13AB01
0316hb4_C_DA10_DA11miBBB10850.34BB10
0326hb4_C_DA11_DT12BBBBB00680.29BB00
0336hb4_C_DT12_DG13NANNANT00.28BA09
0346hb4_C_DG13_DT14NANNANT00.45BB16
0356hb4_C_DT14_DC15BBBBB00630.26BB00
0366hb4_C_DC15_DT16B12BB04300.24BB04
0376hb4_C_DT16_DG17BBBBB00630.38BB00
0386hb4_C_DG17_DC18B-ABA01300.34BA01
0396hb4_C_DC18_DA19AAAAA02620.35AA02
0406hb4_C_DA19_DC20NANNANT00.39AA01
0416hb4_C_DC20_DA21A-BAB01240.39AB01
0426hb4_C_DA21_DG22BBBBB00700.14BB00
0436hb4_E_DC1_DT2B-ABA05300.39BA05
0446hb4_E_DT2_DG3AAAAA09390.38AA09
0456hb4_E_DG3_DT4AAAAA02300.43AA02
0466hb4_E_DT4_DG5A-BAB03430.42AB03
0476hb4_E_DG5_DC6B12BB04190.49BB04
0486hb4_E_DC6_DA7BB2BB07580.21BB07
0496hb4_E_DA7_DG8miBBB10700.31BB10
0506hb4_E_DG8_DA9miBBB10520.37BB10
0516hb4_E_DA9_DC10BBBBB00380.38BB00
0526hb4_E_DC10_DA11B12BB04600.24BB04
0536hb4_E_DA11_DT12BBBBB00120.22BB00
0546hb4_E_DT12_DT13B-ABA05600.35BA05
0556hb4_E_DT13_DC14AAAAA02670.33AA02
0566hb4_E_DC14_DA15NANNANT00.51IC03
0576hb4_E_DA15_DA16BBBBB00710.24BB00
0586hb4_E_DA16_DT17BBBBB00820.27BB00
0596hb4_E_DT17_DT18BBBBB00610.28BB00
0606hb4_E_DT18_DG19B12BB04350.30BB04
0616hb4_E_DG19_DT20BBBBB01490.23BB01
0626hb4_E_DT20_DT.A21BBBBB00390.41BB00
0636hb4_E_DT20_DT.B21BBBBB01820.14BB01
0646hb4_E_DT.A21_DA.A22B12BB04560.32BB04
0656hb4_E_DT.B21_DA.B22BBBBB00170.44BB00
0666hb4_F_DT1_DA2BB2BB07750.15BB07
0676hb4_F_DA2_DA3BBBBB00840.18BB00
0686hb4_F_DA3_DC4BBBBB00800.20BB00
0696hb4_F_DC4_DA5BBBBB00780.22BB00
0706hb4_F_DA5_DA6BBBBB00940.17BB00
0716hb4_F_DA6_DT7B-ABA08550.42BA08
0726hb4_F_DT7_DT8AAAAA02130.42AA02
0736hb4_F_DT8_DG9AAAAA09250.38AA09
0746hb4_F_DG9_DA10A-BAB01540.14AB01
0756hb4_F_DA10_DA11B12BB04350.25BB04
0766hb4_F_DA11_DT12BBBBB01780.17BB01
0776hb4_F_DT12_DG13NANNANT00.31BA09
0786hb4_F_DG13_DT14NANNANT00.47BB16
0796hb4_F_DT14_DC15BBBBB00660.30BB00
0806hb4_F_DC15_DT16B12BB04250.24BB04
0816hb4_F_DT16_DG17BBBBB00600.39BB00
0826hb4_F_DG17_DC18B-ABA05390.36BA05
0836hb4_F_DC18_DA19AAAAA02590.30AA02
0846hb4_F_DA19_DC20NANNANT00.41AA01
0856hb4_F_DC20_DA21A-BAB01290.38AB01
0866hb4_F_DA21_DG22BBBBB00690.14BB00
0876hb4_H_DC.A1_DT.A2NANNANT00.55BA05
0886hb4_H_DC.B1_DT.B2B-ABA08280.48BA08
0896hb4_H_DT.A2_DG.A3AAAAA04200.73AA04
0906hb4_H_DT.B2_DG.B3AAAAA08170.41AA08
0916hb4_H_DG.A3_DT4AAAAA02160.41AA02
0926hb4_H_DG.B3_DT4NANNANT00.46AA02
0936hb4_H_DT4_DG5A-BAB03420.40AB03
0946hb4_H_DG5_DC6B12BB04240.46BB04
0956hb4_H_DC6_DA7BB2BB07620.20BB07
0966hb4_H_DA7_DG8B-ABA10170.42BA10
0976hb4_H_DG8_DA9NANNANT00.40BB10
0986hb4_H_DA9_DC10A-BAB03750.34AB03
0996hb4_H_DC10_DA11B12BB04540.27BB04
1006hb4_H_DA11_DT12BBBBB00100.28BB00
1016hb4_H_DT12_DT13B-ABA05360.33BA05
1026hb4_H_DT13_DC14AAAAA02630.34AA02
1036hb4_H_DC14_DA15NANNANT00.63AA10
1046hb4_H_DA15_DA16AAAAA02360.41AA02
1056hb4_H_DA16_DT17A-BAB02730.29AB02
1066hb4_H_DT17_DT18BBBBB00420.28BB00
1076hb4_H_DT18_DG19B12BB04260.32BB04
1086hb4_H_DG19_DT20BBBBB00580.27BB00
1096hb4_H_DT20_DT21BBBBB00260.32BB00
1106hb4_H_DT21_DA22BBBBB00330.36BB00
1116hb4_I_DT1_DA2BB2BB07780.18BB07
1126hb4_I_DA2_DA3BBBBB00820.15BB00
1136hb4_I_DA3_DC4BBBBB00700.23BB00
1146hb4_I_DC4_DA5BBBBB00800.20BB00
1156hb4_I_DA5_DA6BBBBB00920.20BB00
1166hb4_I_DA6_DT7NANNANT00.43BA08
1176hb4_I_DT7_DT8AAAAA02140.42AA02
1186hb4_I_DT8_DG9AAAAA09240.39AA09
1196hb4_I_DG9_DA10A-BAB01540.13AB01
1206hb4_I_DA10_DA11B12BB04390.25BB04
1216hb4_I_DA11_DT12BBBBB00660.22BB00
1226hb4_I_DT12_DG13NANNANT00.29BA09
1236hb4_I_DG13_DT14NANNANT00.45BB16
1246hb4_I_DT14_DC15BBBBB00580.29BB00
1256hb4_I_DC15_DT16NANNANT00.64BA10
1266hb4_I_DT16_DG17A-BAB03120.63AB03
1276hb4_I_DG17_DC18B-ABA01450.35BA01
1286hb4_I_DC18_DA19AAAAA02580.32AA02
1296hb4_I_DA19_DC20NANNANT00.45AA01
1306hb4_I_DC20_DA21A-BAB01360.36AB01
1316hb4_I_DA21_DG22BBBBB00570.15BB00
1326hb4_K_DC1_DT2NANNANT00.56BA08
1336hb4_K_DT2_DG3AAAAA00100.51AA00
1346hb4_K_DG3_DT4AAAAA02340.40AA02
1356hb4_K_DT4_DG5A-BAB03390.39AB03
1366hb4_K_DG5_DC6B12BB04180.53BB04
1376hb4_K_DC6_DA7BB2BB07710.20BB07
1386hb4_K_DA7_DG8miBBB10660.37BB10
1396hb4_K_DG8_DA9NANNANT00.51BB11
1406hb4_K_DA9_DC10B-ABA09140.47BA09
1416hb4_K_DC10_DA11NANNANT00.69BB17
1426hb4_K_DA11_DT12NANNANT00.62BA17
1436hb4_K_DT12_DT13NANNANT00.44BA08
1446hb4_K_DT13_DC14AAAAA09310.35AA09
1456hb4_K_DC14_DA15NANNANT00.53IC03
1466hb4_K_DA15_DA16BBBBB00710.22BB00
1476hb4_K_DA16_DT17BBBBB00770.27BB00
1486hb4_K_DT17_DT18BBBBB00520.26BB00
1496hb4_K_DT18_DG.A19B12BB04190.31BB04
1506hb4_K_DT18_DG.B19B12BB04210.28BB04
1516hb4_K_DG.A19_DT.A20BBBBB00770.32BB00
1526hb4_K_DG.B19_DT.B20BBBBB00670.20BB00
1536hb4_K_DT.A20_DT.A21BBBBB00790.32BB00
1546hb4_K_DT.B20_DT.B21BBBBB00190.28BB00
1556hb4_K_DT.A21_DA.A22BBBBB00330.33BB00
1566hb4_K_DT.B21_DA.B22A-BAB03210.46AB03
1576hb4_L_DT1_DA2BB2BB07830.19BB07
1586hb4_L_DA2_DA3BBBBB00820.18BB00
1596hb4_L_DA3_DC4BBBBB00800.23BB00
1606hb4_L_DC4_DA5BBBBB00810.20BB00
1616hb4_L_DA5_DA6BBBBB00880.20BB00
1626hb4_L_DA6_DT7B-ABA08550.43BA08
1636hb4_L_DT7_DT8AAAAA02150.41AA02
1646hb4_L_DT8_DG9AAAAA09160.37AA09
1656hb4_L_DG9_DA10A-BAB01380.13AB01
1666hb4_L_DA10_DA11B12BB04440.25BB04
1676hb4_L_DA11_DT12BBBBB01760.19BB01
1686hb4_L_DT12_DG13miBBB10880.17BB10
1696hb4_L_DG13_DT14BBBBB00680.23BB00
1706hb4_L_DT14_DC15BBBBB00600.28BB00
1716hb4_L_DC15_DT16NANNANT00.38BA08
1726hb4_L_DT16_DG17BBBBB00440.36BB00
1736hb4_L_DG17_DC18NANNANT00.63BB12
1746hb4_L_DC18_DA19AAAAA09370.42AA09
1756hb4_L_DA19_DC20NANNANT00.39AA01
1766hb4_L_DC20_DA21A-BAB01290.40AB01
1776hb4_L_DA21_DG22BBBBB00740.14BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
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Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N