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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
TFAM bound to Site-X

Results of the assignment of 177 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0016hc3_B_DT1_DA2BBBBB00730.40BB00
0026hc3_B_DA2_DA3B-ABA16100.42BA16
0036hc3_B_DA3_DC4AA2AA12130.64AA12
0046hc3_B_DC4_DA5A-BAB03460.46AB03
0056hc3_B_DA5_DA6NANNANT00.42BB10
0066hc3_B_DA6_DA7NANNANT00.53BB10
0076hc3_B_DA7_DA8BB2BB07800.26BB07
0086hc3_B_DA8_DA9BBBBB00790.18BB00
0096hc3_B_DA9_DA10BBBBB01660.26BB01
0106hc3_B_DA10_DT11BBBBB01790.19BB01
0116hc3_B_DT11_DT12BBBBB01460.31BB01
0126hc3_B_DT12_DT13B-ABA05740.19BA05
0136hc3_B_DT13_DC14AAAAA09480.35AA09
0146hc3_B_DC14_DC15AAAAA09150.27AA09
0156hc3_B_DC15_DA16NANNANT00.42AA02
0166hc3_B_DA16_DC17BBBBB01690.27BB01
0176hc3_B_DC17_DC18B-ABA05640.22BA05
0186hc3_B_DC18_DA19BBBBB00250.43BB00
0196hc3_B_DA19_DA20B12BB04620.27BB04
0206hc3_B_DA20_DA21BBBBB00840.23BB00
0216hc3_B_DA21_DC22BBBBB00810.26BB00
0226hc3_C_DT2_DT3A-BAB01150.33AB01
0236hc3_C_DT3_DT4BBBBB01620.21BB01
0246hc3_C_DT4_DG5BBBBB01570.33BB01
0256hc3_C_DG5_DG6NANNANT00.47BA08
0266hc3_C_DG6_DT7AAAAA0060.55AA00
0276hc3_C_DT7_DG8AAAAA00160.45AA00
0286hc3_C_DG8_DG9A-BAB03700.36AB03
0296hc3_C_DG9_DA10B12BB04700.19BB04
0306hc3_C_DA10_DA11BBBBB00930.19BB00
0316hc3_C_DA11_DA12BBBBB00700.19BB00
0326hc3_C_DA12_DT13B-ABA05830.12BA05
0336hc3_C_DT13_DT14BBBBB01570.28BB01
0346hc3_C_DT14_DT15BBBBB01860.11BB01
0356hc3_C_DT15_DT16BBBBB01650.13BB01
0366hc3_C_DT16_DT17BBBBB01580.24BB01
0376hc3_C_DT17_DT18NANNANT01.00BB05
0386hc3_C_DT18_DG19NANNANT00.52AA10
0396hc3_C_DG19_DT20A-BAB04550.29AB04
0406hc3_C_DT20_DT21BBBBB01770.13BB01
0416hc3_C_DT21_DA22BBBBB00530.32BB00
0426hc3_C_DA22_DG23BB2BB07810.18BB07
0436hc3_E_DT1_DA2BBBBB00770.42BB00
0446hc3_E_DA2_DA3B-ABA13650.35BA13
0456hc3_E_DA3_DC4AAAAA0870.59AA08
0466hc3_E_DC4_DA5A-BAB03470.45AB03
0476hc3_E_DA5_DA6NANNANT00.43BB10
0486hc3_E_DA6_DA7NANNANT00.45BB10
0496hc3_E_DA7_DA8BB2BB07760.27BB07
0506hc3_E_DA8_DA9BBBBB01870.21BB01
0516hc3_E_DA9_DA10BBBBB01520.33BB01
0526hc3_E_DA10_DT11BBBBB00480.22BB00
0536hc3_E_DT11_DT12BBBBB01570.26BB01
0546hc3_E_DT12_DT13BBBBB00390.25BB00
0556hc3_E_DT13_DC14NANNANT00.49BA08
0566hc3_E_DC14_DC15AAAAA02240.46AA02
0576hc3_E_DC15_DA16AAAAA09120.51AA09
0586hc3_E_DA16_DC17AAAAA02160.47AA02
0596hc3_E_DC17_DC18NANNANT00.53BB17
0606hc3_E_DC18_DA19miBBB10680.38BB10
0616hc3_E_DA19_DA20BB2BB07780.33BB07
0626hc3_E_DA20_DA21BBBBB00820.19BB00
0636hc3_E_DA21_DC22BBBBB00880.20BB00
0646hc3_F_DT2_DT3A-BAB01180.34AB01
0656hc3_F_DT3_DT4BBBBB01620.17BB01
0666hc3_F_DT4_DG5BBBBB01590.30BB01
0676hc3_F_DG5_DG6B-ABA08490.43BA08
0686hc3_F_DG6_DT7NANNANT00.68AA04
0696hc3_F_DT7_DG8AAAAA02110.49AA02
0706hc3_F_DG8_DG9A-BAB03710.34AB03
0716hc3_F_DG9_DA10B12BB04700.20BB04
0726hc3_F_DA10_DA11BBBBB00940.19BB00
0736hc3_F_DA11_DA12BBBBB00740.19BB00
0746hc3_F_DA12_DT13B-ABA05840.11BA05
0756hc3_F_DT13_DT14BBBBB01620.24BB01
0766hc3_F_DT14_DT15BBBBB01880.17BB01
0776hc3_F_DT15_DT16BBBBB01610.13BB01
0786hc3_F_DT16_DT17BBBBB01590.27BB01
0796hc3_F_DT17_DT18NANNANT00.96BB05
0806hc3_F_DT18_DG19NANNANT00.47AA10
0816hc3_F_DG19_DT20A-BAB04390.36AB04
0826hc3_F_DT20_DT21BBBBB01770.12BB01
0836hc3_F_DT21_DA22BBBBB00160.34BB00
0846hc3_F_DA22_DG23BB2BB07830.16BB07
0856hc3_H_DT1_DA2BBBBB00780.42BB00
0866hc3_H_DA2_DA3B-ABA16180.40BA16
0876hc3_H_DA3_DC4AAAAA0870.59AA08
0886hc3_H_DC4_DA5A-BAB03450.45AB03
0896hc3_H_DA5_DA6NANNANT00.45BB10
0906hc3_H_DA6_DA7NANNANT00.46BB10
0916hc3_H_DA7_DA8BB2BB07730.27BB07
0926hc3_H_DA8_DA9BBBBB01870.21BB01
0936hc3_H_DA9_DA10BBBBB01490.34BB01
0946hc3_H_DA10_DT11BBBBB00480.22BB00
0956hc3_H_DT11_DT12BBBBB01600.26BB01
0966hc3_H_DT12_DT.A13BBBBB01130.22BB01
0976hc3_H_DT12_DT.B13B-ABA01300.22BA01
0986hc3_H_DT.A13_DC.A14B-ABA08380.47BA08
0996hc3_H_DT.B13_DC.B14AAAAA02790.28AA02
1006hc3_H_DC.A14_DC.A15AAAAA0280.44AA02
1016hc3_H_DC.B14_DC.B15NANNANT00.86BA09
1026hc3_H_DC.A15_DA.A16NANNANT02.10OP19
1036hc3_H_DC.B15_DA.B16NANNANT00.95IC04
1046hc3_H_DA.A16_DC.A17NANNANT00.78AA01
1056hc3_H_DA.B16_DC.B17NANNANT00.65BA09
1066hc3_H_DC.A17_DC.A18NANNANT00.71BBS1
1076hc3_H_DC.B17_DC.B18NANNANT00.64BBS1
1086hc3_H_DC.A18_DA.A19NANNANT00.77BA08
1096hc3_H_DC.B18_DA.B19BBBBB00190.57BB00
1106hc3_H_DA.A19_DA.A20NANNANT00.85IC04
1116hc3_H_DA.B19_DA.B20BBBBB00710.20BB00
1126hc3_H_DA.A20_DA21BBBBB00840.20BB00
1136hc3_H_DA.B20_DA21BBBBB00860.31BB00
1146hc3_H_DA21_DC22BBBBB00890.20BB00
1156hc3_I_DT2_DT3A-BAB01180.35AB01
1166hc3_I_DT3_DT4BBBBB01610.17BB01
1176hc3_I_DT4_DG5BBBBB01550.32BB01
1186hc3_I_DG5_DG6B-ABA13500.33BA13
1196hc3_I_DG6_DT7AAAAA04150.63AA04
1206hc3_I_DT7_DG8AAAAA00100.45AA00
1216hc3_I_DG8_DG9A-BAB03690.34AB03
1226hc3_I_DG9_DA10B12BB04690.20BB04
1236hc3_I_DA10_DA11BBBBB00940.19BB00
1246hc3_I_DA11_DA12BBBBB00750.19BB00
1256hc3_I_DA12_DT13B-ABA05820.11BA05
1266hc3_I_DT13_DT14BBBBB01620.25BB01
1276hc3_I_DT14_DT15BBBBB01870.16BB01
1286hc3_I_DT15_DT16BBBBB01540.14BB01
1296hc3_I_DT16_DT17BBBBB01560.27BB01
1306hc3_I_DT17_DT18NANNANT00.97BB05
1316hc3_I_DT18_DG19NANNANT00.47AA10
1326hc3_I_DG19_DT20A-BAB04560.32AB04
1336hc3_I_DT20_DT21BBBBB01720.15BB01
1346hc3_I_DT21_DA22BBBBB00150.38BB00
1356hc3_I_DA22_DG23BB2BB07810.16BB07
1366hc3_K_DT1_DA2BBBBB00750.38BB00
1376hc3_K_DA2_DA3B-ABA16130.43BA16
1386hc3_K_DA3_DC4AA2AA12100.64AA12
1396hc3_K_DC4_DA5A-BAB03470.46AB03
1406hc3_K_DA5_DA6NANNANT00.40BB10
1416hc3_K_DA6_DA7NANNANT00.53BB10
1426hc3_K_DA7_DA8BB2BB07780.26BB07
1436hc3_K_DA8_DA9BBBBB00800.17BB00
1446hc3_K_DA9_DA10BBBBB01660.26BB01
1456hc3_K_DA10_DT11BBBBB01800.19BB01
1466hc3_K_DT11_DT12BBBBB01440.31BB01
1476hc3_K_DT12_DT13B-ABA05570.18BA05
1486hc3_K_DT13_DC14AAAAA09670.34AA09
1496hc3_K_DC14_DC15AAAAA09230.27AA09
1506hc3_K_DC15_DA16NANNANT00.56AB03
1516hc3_K_DA16_DC17A-BAB03770.23AB03
1526hc3_K_DC17_DC18B-ABA05570.20BA05
1536hc3_K_DC18_DA19NANNANT00.61BB16
1546hc3_K_DA19_DA20BB2BB07790.19BB07
1556hc3_K_DA20_DA21BBBBB00920.20BB00
1566hc3_K_DA21_DC22BBBBB00820.27BB00
1576hc3_L_DT2_DT3A-BAB01190.33AB01
1586hc3_L_DT3_DT4BBBBB01610.21BB01
1596hc3_L_DT4_DG5BBBBB01580.33BB01
1606hc3_L_DG5_DG6NANNANT00.46BA08
1616hc3_L_DG6_DT7NANNANT00.54AA00
1626hc3_L_DT7_DG8AAAAA00120.45AA00
1636hc3_L_DG8_DG9A-BAB03700.36AB03
1646hc3_L_DG9_DA10B12BB04730.19BB04
1656hc3_L_DA10_DA11BBBBB00940.19BB00
1666hc3_L_DA11_DA12BBBBB00680.21BB00
1676hc3_L_DA12_DT13B-ABA05830.12BA05
1686hc3_L_DT13_DT14BBBBB01580.28BB01
1696hc3_L_DT14_DT15BBBBB01850.12BB01
1706hc3_L_DT15_DT16BBBBB01670.13BB01
1716hc3_L_DT16_DT17BBBBB00500.28BB00
1726hc3_L_DT17_DT18NANNANT01.01BB05
1736hc3_L_DT18_DG19NANNANT00.50AA10
1746hc3_L_DG19_DT20A-BAB04590.30AB04
1756hc3_L_DT20_DT21BBBBB01770.12BB01
1766hc3_L_DT21_DA22BBBBB00540.31BB00
1776hc3_L_DA22_DG23BB2BB07840.16BB07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N