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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Post-catalytic Complex of Human DNA Polymerase Mu with Templating Adenine and Mn-8oxodGMP

Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016ipd_T_DC1_DG2A-BAB01570.33AB01
026ipd_T_DG2_DG3BBBBB01700.19BB01
036ipd_T_DG3_DC4BBBBB01670.25BB01
046ipd_T_DC4_DA5NANNANT01.17OP21
056ipd_T_DA5_DT6BBBBB00610.36BB00
066ipd_T_DT6_DA7B-ABA13700.34BA13
076ipd_T_DA7_DC8A-BAB05880.17AB05
086ipd_T_DC8_DG9BBBBB00220.40BB00
096ipd_P_DC1_DG2AAAAA00890.11AA00
106ipd_P_DG2_DT3AAAAA00770.14AA00
116ipd_P_DT3_DA4AAAAA00750.17AA00
126ipd_P_DA4_8OG5NANNANT00.61AB2S
136ipd_D_DG1_DC2B-ABA05160.26BA05
146ipd_D_DC2_DC.A3A-BAB01720.27AB01
156ipd_D_DC2_DC.B3NANNANT00.46AA02
166ipd_D_DC.A3_DG.A4BBBBB00760.33BB00
176ipd_D_DC.B3_DG.B4NANNANT00.48AB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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