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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Post-catalytic Complex of Human DNA Polymerase Mu with Templating Cytosine and Mn-8oxodGMP

Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016ipf_T_DC1_DG2A-BAB01620.30AB01
026ipf_T_DG2_DG3BBBBB00240.27BB00
036ipf_T_DG3_DC4BBBBB01670.24BB01
046ipf_T_DC4_DC5NANNANT01.17OP21
056ipf_T_DC5_DT6BBBBB00660.34BB00
066ipf_T_DT6_DA7NANNANT00.51BA08
076ipf_T_DA7_DC8A-BAB05210.17AB05
086ipf_T_DC8_DG9BBBBB00300.38BB00
096ipf_P_DC1_DG2AAAAA00910.11AA00
106ipf_P_DG2_DT3AAAAA00820.13AA00
116ipf_P_DT3_DA.A4AAAAA00620.19AA00
126ipf_P_DA.A4_8OG5AAAAA09840.22AA09
136ipf_D_DG1_DC2B-ABA05150.26BA05
146ipf_D_DC2_DC3A-BAB01240.27AB01
156ipf_D_DC3_DG4BB2BB07230.75BB07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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