Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Post-catalytic Complex of Human DNA Polymerase Mu with Templating Cytosine and Mg-8oxodGMP

Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016ipg_T_DC1_DG2A-BAB01580.29AB01
026ipg_T_DG2_DG3B-ABA05810.22BA05
036ipg_T_DG3_DC4BBBBB00120.29BB00
046ipg_T_DC4_DC5NANNANT01.15OP21
056ipg_T_DC5_DT6BBBBB00600.34BB00
066ipg_T_DT6_DA.A7NANNANT00.31BA09
076ipg_T_DT6_DA.B7B-ABA10580.38BA10
086ipg_T_DA.A7_DC8A-BAB05640.16AB05
096ipg_T_DA.B7_DC8A-BAB05960.15AB05
106ipg_T_DC8_DG9BBBBB00330.36BB00
116ipg_P_DC1_DG2AAAAA00900.14AA00
126ipg_P_DG2_DT3AAAAA00840.12AA00
136ipg_P_DT3_DA4AAAAA00760.16AA00
146ipg_P_DA4_8OG5AAAAA09900.19AA09
156ipg_D_DG1_DC2B-ABA05170.26BA05
166ipg_D_DC2_DC3A-BAB01440.27AB01
176ipg_D_DC3_DG4BBBBB00860.27BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N