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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
DNA minidumbbell structure of two CTTG repeats

Results of the assignment of 140 detected steps in 20 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0016j37-m10_A_DC1_DT2NANNANT00.86OP04
0026j37-m11_A_DC1_DT2NANNANT00.86OP04
0036j37-m12_A_DC1_DT2NANNANT00.83OP04
0046j37-m13_A_DC1_DT2NANNANT01.23BB20
0056j37-m14_A_DC1_DT2NANNANT01.64AB02
0066j37-m15_A_DC1_DT2NANNANT00.86OP04
0076j37-m16_A_DC1_DT2NANNANT01.00BB20
0086j37-m17_A_DC1_DT2NANNANT00.86OP04
0096j37-m18_A_DC1_DT2NANNANT00.86OP04
0106j37-m19_A_DC1_DT2NANNANT00.93OP04
0116j37-m1_A_DC1_DT2NANNANT01.66AB02
0126j37-m20_A_DC1_DT2NANNANT00.85OP04
0136j37-m2_A_DC1_DT2NANNANT01.61AB02
0146j37-m3_A_DC1_DT2NANNANT01.60AB02
0156j37-m4_A_DC1_DT2NANNANT00.89OP04
0166j37-m5_A_DC1_DT2NANNANT00.84OP04
0176j37-m6_A_DC1_DT2NANNANT00.85OP04
0186j37-m7_A_DC1_DT2NANNANT01.76OP18
0196j37-m8_A_DC1_DT2NANNANT00.87OP04
0206j37-m9_A_DC1_DT2NANNANT01.19BB20
0216j37-m10_A_DT2_DT3NANNANT01.64AB02
0226j37-m11_A_DT2_DT3NANNANT01.63AB02
0236j37-m12_A_DT2_DT3NANNANT01.61AB02
0246j37-m13_A_DT2_DT3NANNANT01.66AB02
0256j37-m14_A_DT2_DT3NANNANT01.65AB02
0266j37-m15_A_DT2_DT3NANNANT01.60AB02
0276j37-m16_A_DT2_DT3NANNANT01.68AB02
0286j37-m17_A_DT2_DT3NANNANT01.63AB02
0296j37-m18_A_DT2_DT3NANNANT01.63AB02
0306j37-m19_A_DT2_DT3NANNANT01.57AB02
0316j37-m1_A_DT2_DT3NANNANT01.64AB02
0326j37-m20_A_DT2_DT3NANNANT01.64AB02
0336j37-m2_A_DT2_DT3NANNANT01.64AB02
0346j37-m3_A_DT2_DT3NANNANT01.64AB02
0356j37-m4_A_DT2_DT3NANNANT01.62AB02
0366j37-m5_A_DT2_DT3NANNANT01.61AB02
0376j37-m6_A_DT2_DT3NANNANT01.64AB02
0386j37-m7_A_DT2_DT3NANNANT01.66AB02
0396j37-m8_A_DT2_DT3NANNANT01.62AB02
0406j37-m9_A_DT2_DT3NANNANT01.65AB02
0416j37-m10_A_DT3_DG4NANNANT01.04BB07
0426j37-m11_A_DT3_DG4NANNANT01.05BB07
0436j37-m12_A_DT3_DG4NANNANT01.06BB07
0446j37-m13_A_DT3_DG4NANNANT01.04BB07
0456j37-m14_A_DT3_DG4NANNANT01.04BB07
0466j37-m15_A_DT3_DG4NANNANT01.07BB07
0476j37-m16_A_DT3_DG4NANNANT01.04BB07
0486j37-m17_A_DT3_DG4NANNANT01.04BB07
0496j37-m18_A_DT3_DG4NANNANT01.04BB07
0506j37-m19_A_DT3_DG4NANNANT01.08BB07
0516j37-m1_A_DT3_DG4NANNANT01.08BB07
0526j37-m20_A_DT3_DG4NANNANT01.04BB07
0536j37-m2_A_DT3_DG4NANNANT01.05BB07
0546j37-m3_A_DT3_DG4NANNANT01.05BB07
0556j37-m4_A_DT3_DG4NANNANT01.05BB07
0566j37-m5_A_DT3_DG4NANNANT01.08BB07
0576j37-m6_A_DT3_DG4NANNANT01.03BB07
0586j37-m7_A_DT3_DG4NANNANT01.04BB07
0596j37-m8_A_DT3_DG4NANNANT01.05BB07
0606j37-m9_A_DT3_DG4NANNANT01.04BB07
0616j37-m10_A_DG4_DC5NANNANT00.82BB12
0626j37-m11_A_DG4_DC5NANNANT00.81BB12
0636j37-m12_A_DG4_DC5NANNANT00.82BB12
0646j37-m13_A_DG4_DC5NANNANT00.81BB12
0656j37-m14_A_DG4_DC5NANNANT00.80BB12
0666j37-m15_A_DG4_DC5NANNANT00.82BB12
0676j37-m16_A_DG4_DC5NANNANT00.80BB12
0686j37-m17_A_DG4_DC5NANNANT00.81BB12
0696j37-m18_A_DG4_DC5NANNANT00.81BB12
0706j37-m19_A_DG4_DC5NANNANT00.84BB12
0716j37-m1_A_DG4_DC5NANNANT00.83BB12
0726j37-m20_A_DG4_DC5NANNANT00.81BB12
0736j37-m2_A_DG4_DC5NANNANT00.82BB12
0746j37-m3_A_DG4_DC5NANNANT00.81BB12
0756j37-m4_A_DG4_DC5NANNANT00.81BB12
0766j37-m5_A_DG4_DC5NANNANT00.82BB12
0776j37-m6_A_DG4_DC5NANNANT00.81BB12
0786j37-m7_A_DG4_DC5NANNANT00.80BB12
0796j37-m8_A_DG4_DC5NANNANT00.80BB12
0806j37-m9_A_DG4_DC5NANNANT00.81BB12
0816j37-m10_A_DC5_DT6NANNANT01.79OP18
0826j37-m11_A_DC5_DT6NANNANT01.76OP18
0836j37-m12_A_DC5_DT6NANNANT00.82OP04
0846j37-m13_A_DC5_DT6NANNANT01.73OP18
0856j37-m14_A_DC5_DT6NANNANT01.73OP18
0866j37-m15_A_DC5_DT6NANNANT00.85OP04
0876j37-m16_A_DC5_DT6NANNANT01.76OP18
0886j37-m17_A_DC5_DT6NANNANT01.77OP18
0896j37-m18_A_DC5_DT6NANNANT01.76OP18
0906j37-m19_A_DC5_DT6NANNANT00.79OP04
0916j37-m1_A_DC5_DT6NANNANT00.89OP04
0926j37-m20_A_DC5_DT6NANNANT01.77OP18
0936j37-m2_A_DC5_DT6NANNANT01.72OP18
0946j37-m3_A_DC5_DT6NANNANT01.72OP18
0956j37-m4_A_DC5_DT6NANNANT01.75OP18
0966j37-m5_A_DC5_DT6NANNANT00.85OP04
0976j37-m6_A_DC5_DT6NANNANT01.77OP18
0986j37-m7_A_DC5_DT6NANNANT01.74OP18
0996j37-m8_A_DC5_DT6NANNANT01.75OP18
1006j37-m9_A_DC5_DT6NANNANT01.71OP18
1016j37-m10_A_DT6_DT7NANNANT01.64BB10
1026j37-m11_A_DT6_DT7NANNANT01.65BB10
1036j37-m12_A_DT6_DT7NANNANT01.36OP16
1046j37-m13_A_DT6_DT7NANNANT01.69BB10
1056j37-m14_A_DT6_DT7NANNANT01.68BB10
1066j37-m15_A_DT6_DT7NANNANT01.62BB10
1076j37-m16_A_DT6_DT7NANNANT01.66BB10
1086j37-m17_A_DT6_DT7NANNANT01.67BB10
1096j37-m18_A_DT6_DT7NANNANT01.67BB10
1106j37-m19_A_DT6_DT7NANNANT01.89OP13
1116j37-m1_A_DT6_DT7NANNANT01.59BB10
1126j37-m20_A_DT6_DT7NANNANT01.65BB10
1136j37-m2_A_DT6_DT7NANNANT01.69BB10
1146j37-m3_A_DT6_DT7NANNANT01.87OP13
1156j37-m4_A_DT6_DT7NANNANT01.68BB10
1166j37-m5_A_DT6_DT7NANNANT01.62BB10
1176j37-m6_A_DT6_DT7NANNANT01.66BB10
1186j37-m7_A_DT6_DT7NANNANT01.68BB10
1196j37-m8_A_DT6_DT7NANNANT01.66BB10
1206j37-m9_A_DT6_DT7NANNANT01.69BB10
1216j37-m10_A_DT7_DG8NANNANT01.43OP19
1226j37-m11_A_DT7_DG8NANNANT01.46OP19
1236j37-m12_A_DT7_DG8NANNANT01.46OP19
1246j37-m13_A_DT7_DG8NANNANT01.49OP19
1256j37-m14_A_DT7_DG8NANNANT01.42OP19
1266j37-m15_A_DT7_DG8NANNANT01.40OP19
1276j37-m16_A_DT7_DG8NANNANT01.42OP19
1286j37-m17_A_DT7_DG8NANNANT01.44OP19
1296j37-m18_A_DT7_DG8NANNANT01.45OP19
1306j37-m19_A_DT7_DG8NANNANT01.41OP19
1316j37-m1_A_DT7_DG8NANNANT01.40OP19
1326j37-m20_A_DT7_DG8NANNANT01.45OP19
1336j37-m2_A_DT7_DG8NANNANT01.47OP19
1346j37-m3_A_DT7_DG8NANNANT01.41OP19
1356j37-m4_A_DT7_DG8NANNANT01.44OP19
1366j37-m5_A_DT7_DG8NANNANT01.40OP19
1376j37-m6_A_DT7_DG8NANNANT01.46OP19
1386j37-m7_A_DT7_DG8NANNANT01.49OP19
1396j37-m8_A_DT7_DG8NANNANT01.43OP19
1406j37-m9_A_DT7_DG8NANNANT01.44OP19

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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Color by NtC (balls)

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IC

OPN

Z

N