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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of Arabidopsis thaliana VAL1 in complex with FLC DNA fragment

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016j9a_B_DA1_DT2NANNANT00.70BB07
026j9a_B_DT2_DT3B-ABA08810.36BA08
036j9a_B_DT3_DC4NANNANT00.34BB03
046j9a_B_DC4_DT5miBBB15260.58BB15
056j9a_B_DT5_DG6BB2BB07200.51BB07
066j9a_B_DG6_DC7B-ABA09770.38BA09
076j9a_B_DC7_DA8NANNANT00.53BB03
086j9a_B_DA8_DT9BBBBB00230.36BB00
096j9a_B_DT9_DG10B12BB04610.34BB04
106j9a_B_DG10_DG11NANNANT00.32BB07
116j9a_B_DG11_DA12BB1BB02640.25BB02
126j9a_B_DA12_DT13BBBBB00190.48BB00
136j9a_B_DT13_DT14B12BB04320.29BB04
146j9a_B_DT14_DG15B12BB04720.23BB04
156j9a_C_DA1_DA2NANNANT00.58BB07
166j9a_C_DA2_DT3NANNANT00.61BB07
176j9a_C_DT3_DC4NANNANT00.59BB08
186j9a_C_DC4_DC5BB1BB16630.35BB16
196j9a_C_DC5_DA6BB2BB07740.27BB07
206j9a_C_DA6_DT7BBBBB00770.33BB00
216j9a_C_DT7_DG8B12BB04390.23BB04
226j9a_C_DG8_DC9BBBBB00380.34BB00
236j9a_C_DC9_DA10miBBB10720.29BB10
246j9a_C_DA10_DG11B12BB04530.25BB04
256j9a_C_DG11_DA12BBBBB00610.14BB00
266j9a_C_DA12_DA13BB1BB02470.29BB02
276j9a_C_DA13_DT14BBBBB00180.39BB00
286j9a_C_DT14_DC15B12BB04110.30BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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