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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of Arabidopsis thaliana transcription factor LEC2-DNA complex

Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016j9c_B_DG1_DA2BBBBB00380.36BB00
026j9c_B_DA2_DT3BBBBB00720.20BB00
036j9c_B_DT3_DT4BBBBB00730.24BB00
046j9c_B_DT4_DC5BB1BB02590.25BB02
056j9c_B_DC5_DT6BBBBB00200.33BB00
066j9c_B_DT6_DG7B-ABA08790.37BA08
076j9c_B_DG7_DC8BBBBB01590.31BB01
086j9c_B_DC8_DA9BBBBB00580.27BB00
096j9c_B_DA9_DT10BB1BB02600.27BB02
106j9c_B_DT10_DG11BBBBB00290.39BB00
116j9c_B_DG11_DG12B12BB04510.26BB04
126j9c_B_DG12_DA13BBBBB00940.13BB00
136j9c_B_DA13_DT14BBBBB00920.19BB00
146j9c_B_DT14_DT15B12BB04440.29BB04
156j9c_C_DC1_DA2NANNANT00.60BB16
166j9c_C_DA2_DA3BBBBB00700.17BB00
176j9c_C_DA3_DT4BBBBB01870.15BB01
186j9c_C_DT4_DC5BBBBB00600.14BB00
196j9c_C_DC5_DC6BBBBB00700.35BB00
206j9c_C_DC6_DA7B12BB04410.30BB04
216j9c_C_DA7_DT8B-ABA05870.14BA05
226j9c_C_DT8_DG9A-BAB03680.43AB03
236j9c_C_DG9_DC10BBBBB01640.35BB01
246j9c_C_DC10_DA11B12BB04610.28BB04
256j9c_C_DA11_DG12BBBBB00200.29BB00
266j9c_C_DG12_DA13BB1BB02350.36BB02
276j9c_C_DA13_DA14BBBBB00250.38BB00
286j9c_C_DA14_DT15BBBBB01760.16BB01
296j9c_E_DG1_DA2BBBBB00390.26BB00
306j9c_E_DA2_DT3BBBBB00710.25BB00
316j9c_E_DT3_DT4BBBBB00760.23BB00
326j9c_E_DT4_DC5BB1BB02670.24BB02
336j9c_E_DC5_DT6BBBBB00350.27BB00
346j9c_E_DT6_DG7B-ABA08790.37BA08
356j9c_E_DG7_DC8BBBBB01610.33BB01
366j9c_E_DC8_DA9BBBBB00620.26BB00
376j9c_E_DA9_DT10BB1BB02300.35BB02
386j9c_E_DT10_DG11BBBBB00270.42BB00
396j9c_E_DG11_DG12B12BB04440.23BB04
406j9c_E_DG12_DA13BBBBB00890.15BB00
416j9c_E_DA13_DT14BBBBB00860.20BB00
426j9c_E_DT14_DT15BB1BB02160.32BB02
436j9c_F_DC1_DA2NANNANT00.51BB03
446j9c_F_DA2_DA3BBBBB00820.20BB00
456j9c_F_DA3_DT4BBBBB01800.20BB01
466j9c_F_DT4_DC5BBBBB00590.18BB00
476j9c_F_DC5_DC6BBBBB00710.33BB00
486j9c_F_DC6_DA7B12BB04370.34BB04
496j9c_F_DA7_DT8B-ABA05200.22BA05
506j9c_F_DT8_DG9NANNANT00.43BB02
516j9c_F_DG9_DC10BBBBB00350.53BB00
526j9c_F_DC10_DA11B12BB04650.28BB04
536j9c_F_DA11_DG12BBBBB00170.29BB00
546j9c_F_DG12_DA13BB1BB02360.35BB02
556j9c_F_DA13_DA14BBBBB00270.35BB00
566j9c_F_DA14_DT15BBBBB01760.19BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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