Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Mycobacterium tuberculosis transcription initiation complex with ECF sigma factor sigma H and 6nt RNA

Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016jcx_H_DT3_DG4NANNANT00.50AB02
026jcx_H_DG4_DC5NANNANT00.68AB02
036jcx_H_DC5_DA6BB1BB16310.61BB16
046jcx_H_DA6_DT7BBBBB00550.34BB00
056jcx_H_DT7_DC8miBBB15550.35BB15
066jcx_H_DC8_DC9B12BB04400.35BB04
076jcx_H_DC9_DG10miBBB10830.16BB10
086jcx_H_DG10_DT11NANNANT00.42BA05
096jcx_H_DT11_DG12AAAAA08690.25AA08
106jcx_H_DG12_DA13AAAAA00740.21AA00
116jcx_H_DA13_DG14NANNANT00.83OP06
126jcx_H_DG14_DT15AAAAA00570.33AA00
136jcx_H_DT15_DC16AAAAA00700.21AA00
146jcx_H_DC16_DG17NANNANT00.37AA01
156jcx_H_DG17_DA18AAAAA00220.31AA00
166jcx_H_DA18_DG19A-BAB05510.27AB05
176jcx_H_DG19_DG20BBBBB00720.20BB00
186jcx_H_DG20_DG21NANNANT00.79BB16
196jcx_H_DG21_DT22NANNANT02.10OP14
206jcx_G_DT3_DT4NANNANT02.32OP09
216jcx_G_DT4_DG5NANNANT01.37OP20
226jcx_G_DG5_DT6NANNANT01.28IC01
236jcx_G_DT6_DG7NANNANT00.81AB02
246jcx_G_DG7_DG8NANNANT01.62IC03
256jcx_G_DG8_DG9NANNANT00.93IC05
266jcx_G_DG9_DA10BBBBB00380.48BB00
276jcx_G_DA10_DG11NANNANT00.81BB08
286jcx_G_DG11_DC12B-ABA10340.61BA10
296jcx_G_DC12_DT13NANNANT01.05OP14
306jcx_G_DT13_DG14NANNANT01.85OP04
316jcx_G_DG14_DT15NANNANT01.14OP16
326jcx_G_DT15_DC16BBBBB00700.24BB00
336jcx_G_DC16_DA17B12BB04240.21BB04
346jcx_G_DA17_DC18BBBBB00910.13BB00
356jcx_G_DC18_DG19BBBBB00700.25BB00
366jcx_G_DG19_DG20B-ABA08520.38BA08
376jcx_G_DG20_DA21NANNANT00.53AB03
386jcx_G_DA21_DT22BBBBB00580.31BB00
396jcx_G_DT22_DG23B12BB04470.32BB04
406jcx_G_DG23_DC24miBBB10560.25BB10
416jcx_G_DC24_DA25NANNANT00.45BB10
426jcx_I_C2_C3AAAAA00860.14AA00
436jcx_I_C3_U4AAAAA00180.29AA00
446jcx_I_U4_C5AAAAA00290.19AA00
456jcx_I_C5_G6AAAAA00740.23AA00
466jcx_I_G6_A7A-BAB05840.11AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N