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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Mycobacterium tuberculosis RNA polymerase transcription initiation open complex with a chimeric ECF sigma factor sigH/E

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016jcy_G_DT3_DT4NANNANT02.51OP15
026jcy_G_DT6_DG7NANNANT00.79AB02
036jcy_G_DG7_DG8NANNANT02.06OP19
046jcy_G_DG8_DG9NANNANT00.87IC02
056jcy_G_DG9_DA10NANNANT00.45BA13
066jcy_G_DA10_DG11NANNANT00.61AB03
076jcy_G_DG11_DC12NANNANT00.75BA10
086jcy_G_DC12_DT13NANNANT00.92OP03
096jcy_G_DT13_DG14NANNANT01.68OP09
106jcy_G_DG14_DT15NANNANT01.06OP16
116jcy_G_DT15_DC16BBBBB00830.12BB00
126jcy_G_DC16_DA17BBBBB00780.19BB00
136jcy_G_DA17_DC18BBBBB01660.14BB01
146jcy_G_DC18_DG19BBBBB00410.26BB00
156jcy_G_DG19_DG20B12BB04810.23BB04
166jcy_G_DG20_DA21B12BB04410.36BB04
176jcy_G_DA21_DT22BB1BB02610.27BB02
186jcy_G_DT22_DG23miBBB15620.34BB15
196jcy_G_DG23_DC24B12BB04400.26BB04
206jcy_G_DC24_DA25B12BB04160.35BB04
216jcy_H_DT3_DG4NANNANT00.45BB07
226jcy_H_DG4_DC5miBBB12300.40BB12
236jcy_H_DC5_DA6BBBBB00240.53BB00
246jcy_H_DA6_DT7BBBBB00800.32BB00
256jcy_H_DT7_DC8B12BB04750.30BB04
266jcy_H_DC8_DC9miBBB10540.18BB10
276jcy_H_DC9_DG10miBBB10830.17BB10
286jcy_H_DG10_DT11B-ABA13180.36BA13
296jcy_H_DT11_DG12AAAAA08370.20AA08
306jcy_H_DG12_DA13AAAAA00900.19AA00
316jcy_H_DA13_DG14NANNANT00.80OP06
326jcy_H_DG14_DT15AAAAA00730.30AA00
336jcy_H_DT15_DC16AAAAA00830.18AA00
346jcy_H_DC16_DG17AA1AA10780.19AA10
356jcy_H_DG17_DA18AAAAA08210.44AA08
366jcy_H_DA18_DG19AAAAA08830.19AA08
376jcy_H_DG19_DG20AAAAA00790.18AA00
386jcy_H_DG20_DG21AA1AA01810.20AA01
396jcy_H_DG21_DT22AAAAA00660.29AA00
406jcy_I_C2_C3AAAAA08860.23AA08
416jcy_I_C3_U4AAAAA00840.25AA00
426jcy_I_U4_C5AAAAA00750.13AA00
436jcy_I_C5_G6AAAAA00660.27AA00
446jcy_I_G6_A7AAAAA00890.19AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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