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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Hatchet Ribozyme Structure soaking with Ir(NH3)6+

Results of the assignment of 82 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016jq6_U_U1_U2NANNANT00.53AA10
026jq6_U_U2_A3AAAAA00500.17AA00
036jq6_U_A3_C4AAAAA08840.21AA08
046jq6_U_C4_U5AAAAA08780.30AA08
056jq6_U_U5_G6AAAAA00950.11AA00
066jq6_U_G6_U7AAAAA00950.09AA00
076jq6_U_U7_G8AAAAA08800.25AA08
086jq6_U_G8_A9OPNOP04860.17OP04
096jq6_U_A9_G10AA1AA06420.46AA06
106jq6_U_G10_A11NANNANT00.54IC01
116jq6_U_A11_A12NANNANT01.09OP14
126jq6_U_A12_U13A-BAB05650.30AB05
136jq6_U_U13_C14OPNOP12860.19OP12
146jq6_U_C14_A15AAAAA00280.39AA00
156jq6_U_A15_G16AA1AA01910.14AA01
166jq6_U_G16_U17AAAAA00660.21AA00
176jq6_U_U17_A18AA1AA01940.13AA01
186jq6_U_A18_A19AAAAA08890.25AA08
196jq6_U_A19_C20AAAAA08830.20AA08
206jq6_U_C20_A21ICLIC02610.41IC02
216jq6_U_A21_A22NANNANT00.90BB1S
226jq6_U_A22_A23NANNANT01.67OPS1
236jq6_U_A23_C24AAAAA00720.20AA00
246jq6_U_C24_A25AAAAA00700.20AA00
256jq6_U_A25_U26AAAAA00820.20AA00
266jq6_U_U26_G27AAAAA00840.13AA00
276jq6_U_G27_U28AAAAA00850.11AA00
286jq6_U_U28_G29A-BAB05780.46AB05
296jq6_U_G29_G30NANNANT01.00BB2S
306jq6_U_G30_G31NANNANT01.62OPS1
316jq6_U_G31_G32AA1AA01400.28AA01
326jq6_U_G32_C33AAAAA08670.31AA08
336jq6_U_C33_U34NANNANT00.47AA10
346jq6_U_U34_U35NANNANT02.07IC03
356jq6_U_U35_A36OPNOP11870.28OP11
366jq6_U_A36_U37AAAAA00600.18AA00
376jq6_U_U37_A38AAAAA00720.15AA00
386jq6_U_A38_U39NANNANT01.17OP04
396jq6_U_U39_C40OPNOP11430.49OP11
406jq6_U_C40_U41AAAAA00740.26AA00
416jq6_U_U41_A42AAAAA00920.16AA00
426jq6_U_A42_A43AAAAA00920.23AA00
436jq6_U_A43_U44AAAAA08860.20AA08
446jq6_U_U44_C45AAAAA08770.28AA08
456jq6_U_C45_U46AAAAA00720.26AA00
466jq6_U_U46_U47NANNANT00.36OP09
476jq6_U_U47_C48NANNANT00.36OP20
486jq6_U_C48_G49NANNANT02.01ZZ01
496jq6_U_G49_G50NANNANT00.68AA04
506jq6_U_G50_A51NANNANT00.51AA01
516jq6_U_A51_U52AAAAA03760.19AA03
526jq6_U_U52_U53AAAAA08720.16AA08
536jq6_U_U53_A54AAAAA08810.16AA08
546jq6_U_A54_G55AA1AA01650.28AA01
556jq6_U_G55_U56AAAAA08900.21AA08
566jq6_U_U56_A57AAAAA00730.22AA00
576jq6_U_A57_U58AAAAA04860.18AA04
586jq6_U_U58_U59NANNANT00.91OP13
596jq6_U_U59_A60OPNOP11760.39OP11
606jq6_U_A60_G61AAAAA00820.23AA00
616jq6_U_G61_U62AA1AA01910.15AA01
626jq6_U_U62_G63NANNANT00.53IC06
636jq6_U_G63_C64NANNANT01.31BA16
646jq6_U_C64_A65AAAAA00290.38AA00
656jq6_U_A65_G66AAAAA08860.20AA08
666jq6_U_G66_A67AAAAA08490.29AA08
676jq6_U_A67_C68AAAAA08570.31AA08
686jq6_U_C68_G69AAAAA03710.32AA03
696jq6_U_G69_U70NANNANT00.55AB03
706jq6_U_U70_U71NANNANT01.44OP15
716jq6_U_U71_A72NANNANT01.41OP18
726jq6_U_A72_A73NANNANT00.58AA04
736jq6_U_A73_A.A74A-BAB04540.27AB04
746jq6_U_A73_A.B74NANNANT00.62AB04
756jq6_U_A.A74_A75NANNANT01.51OP17
766jq6_U_A.B74_A75NANNANT01.73OP17
776jq6_U_A75_C76NANNANT01.39OP20
786jq6_U_C76_C77NANNANT01.31OP19
796jq6_U_C77_A78AAAAA04700.35AA04
806jq6_U_A78_U79AAAAA00780.16AA00
816jq6_U_U79_G80AAAAA00920.09AA00
826jq6_U_G80_U81AAAAA08690.21AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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