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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Solution structure of APOBEC3G-CD2 with ssDNA, Product A

Results of the assignment of 180 detected steps in 20 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0016k3j-m10_B_DA385_DT386NANNANT00.75BA08
0026k3j-m11_B_DA385_DT386AAAAA00550.25AA00
0036k3j-m12_B_DA385_DT386NANNANT00.70AA04
0046k3j-m13_B_DA385_DT386NANNANT00.72BA08
0056k3j-m14_B_DA385_DT386AAAAA00740.26AA00
0066k3j-m15_B_DA385_DT386AAAAA00550.41AA00
0076k3j-m16_B_DA385_DT386NANNANT00.82BA08
0086k3j-m17_B_DA385_DT386NANNANT00.69AA00
0096k3j-m18_B_DA385_DT386AAAAA00690.34AA00
0106k3j-m19_B_DA385_DT386AAAAA00200.28AA00
0116k3j-m1_B_DA385_DT386NANNANT00.88BA01
0126k3j-m20_B_DA385_DT386AAAAA00650.26AA00
0136k3j-m2_B_DA385_DT386AAAAA00360.25AA00
0146k3j-m3_B_DA385_DT386AAAAA00410.27AA00
0156k3j-m4_B_DA385_DT386AAAAA00730.35AA00
0166k3j-m5_B_DA385_DT386AAAAA00500.25AA00
0176k3j-m6_B_DA385_DT386NANNANT00.61AA04
0186k3j-m7_B_DA385_DT386A-BAB05620.49AB05
0196k3j-m8_B_DA385_DT386AAAAA00200.42AA00
0206k3j-m9_B_DA385_DT386B-ABA01190.42BA01
0216k3j-m10_B_DT386_DT387AA2AA12760.50AA12
0226k3j-m11_B_DT386_DT387AA2AA12670.49AA12
0236k3j-m12_B_DT386_DT387AA2AA12670.51AA12
0246k3j-m13_B_DT386_DT387AA2AA12740.55AA12
0256k3j-m14_B_DT386_DT387AA2AA12760.49AA12
0266k3j-m15_B_DT386_DT387NANNANT00.81AA12
0276k3j-m16_B_DT386_DT387AA2AA12770.47AA12
0286k3j-m17_B_DT386_DT387A-BAB05540.43AB05
0296k3j-m18_B_DT386_DT387A-BAB04240.52AB04
0306k3j-m19_B_DT386_DT387AA2AA12710.47AA12
0316k3j-m1_B_DT386_DT387AA2AA12780.48AA12
0326k3j-m20_B_DT386_DT387AA2AA12780.42AA12
0336k3j-m2_B_DT386_DT387AAAAA00110.43AA00
0346k3j-m3_B_DT386_DT387AA2AA12770.43AA12
0356k3j-m4_B_DT386_DT387NANNANT01.04AA12
0366k3j-m5_B_DT386_DT387AA2AA12670.50AA12
0376k3j-m6_B_DT386_DT387AA2AA12780.48AA12
0386k3j-m7_B_DT386_DT387NANNANT00.63BA01
0396k3j-m8_B_DT386_DT387AA2AA12740.56AA12
0406k3j-m9_B_DT386_DT387NANNANT01.12AA12
0416k3j-m10_B_DT387_DC388NANNANT00.70OP06
0426k3j-m11_B_DT387_DC388NANNANT00.61OP06
0436k3j-m12_B_DT387_DC388NANNANT00.70AA00
0446k3j-m13_B_DT387_DC388NANNANT00.84AB04
0456k3j-m14_B_DT387_DC388NANNANT00.64OP06
0466k3j-m15_B_DT387_DC388AAAAA00830.28AA00
0476k3j-m16_B_DT387_DC388NANNANT00.63OP06
0486k3j-m17_B_DT387_DC388NANNANT01.02BB00
0496k3j-m18_B_DT387_DC388NANNANT00.89BA01
0506k3j-m19_B_DT387_DC388NANNANT00.66OP06
0516k3j-m1_B_DT387_DC388NANNANT00.75AB05
0526k3j-m20_B_DT387_DC388OPNOP06120.53OP06
0536k3j-m2_B_DT387_DC388NANNANT00.64OP06
0546k3j-m3_B_DT387_DC388NANNANT00.58OP06
0556k3j-m4_B_DT387_DC388NANNANT00.75AA00
0566k3j-m5_B_DT387_DC388NANNANT00.64OP06
0576k3j-m6_B_DT387_DC388NANNANT00.64AA00
0586k3j-m7_B_DT387_DC388NANNANT00.71OP06
0596k3j-m8_B_DT387_DC388NANNANT00.69AB05
0606k3j-m9_B_DT387_DC388NANNANT00.66IC06
0616k3j-m10_B_DC388_DU389AAAAA00480.36AA00
0626k3j-m11_B_DC388_DU389AAAAA00590.30AA00
0636k3j-m12_B_DC388_DU389AAAAA00540.36AA00
0646k3j-m13_B_DC388_DU389NANNANT01.42OP11
0656k3j-m14_B_DC388_DU389AAAAA00570.30AA00
0666k3j-m15_B_DC388_DU389NANNANT00.66AA00
0676k3j-m16_B_DC388_DU389AAAAA00370.35AA00
0686k3j-m17_B_DC388_DU389NANNANT00.84BA01
0696k3j-m18_B_DC388_DU389AAAAA00160.38AA00
0706k3j-m19_B_DC388_DU389AAAAA00540.31AA00
0716k3j-m1_B_DC388_DU389NANNANT00.87BA01
0726k3j-m20_B_DC388_DU389AAAAA00580.30AA00
0736k3j-m2_B_DC388_DU389AAAAA00500.33AA00
0746k3j-m3_B_DC388_DU389AAAAA00670.28AA00
0756k3j-m4_B_DC388_DU389AAAAA00640.36AA00
0766k3j-m5_B_DC388_DU389AAAAA00420.35AA00
0776k3j-m6_B_DC388_DU389AAAAA00540.36AA00
0786k3j-m7_B_DC388_DU389AAAAA00140.43AA00
0796k3j-m8_B_DC388_DU389NANNANT00.86BA01
0806k3j-m9_B_DC388_DU389NANNANT00.88BA01
0816k3j-m10_B_DU389_5IU390NANNANT00.40AB1S
0826k3j-m11_B_DU389_5IU390AA2AA12650.53AA12
0836k3j-m12_B_DU389_5IU390A-BAB05870.27AB05
0846k3j-m13_B_DU389_5IU390NANNANT00.57AB2S
0856k3j-m14_B_DU389_5IU390AAAAA00540.30AA00
0866k3j-m15_B_DU389_5IU390SYNAB2S830.33AB2S
0876k3j-m16_B_DU389_5IU390AAAAA00330.35AA00
0886k3j-m17_B_DU389_5IU390AAAAA00250.44AA00
0896k3j-m18_B_DU389_5IU390A-BAB05910.23AB05
0906k3j-m19_B_DU389_5IU390NANNANT00.40AB1S
0916k3j-m1_B_DU389_5IU390NANNANT00.45AB1S
0926k3j-m20_B_DU389_5IU390NANNANT00.39AB1S
0936k3j-m2_B_DU389_5IU390AAAAA00150.40AA00
0946k3j-m3_B_DU389_5IU390NANNANT00.46AB2S
0956k3j-m4_B_DU389_5IU390A-BAB05900.26AB05
0966k3j-m5_B_DU389_5IU390NANNANT00.40AB1S
0976k3j-m6_B_DU389_5IU390A-BAB05910.25AB05
0986k3j-m7_B_DU389_5IU390NANNANT00.40AB1S
0996k3j-m8_B_DU389_5IU390AA2AA1270.74AA12
1006k3j-m9_B_DU389_5IU390NANNANT00.75AA12
1016k3j-m10_B_5IU390_DA391NANNANT00.70AAS1
1026k3j-m11_B_5IU390_DA391AAAAA00780.23AA00
1036k3j-m12_B_5IU390_DA391NANNANT01.05OP12
1046k3j-m13_B_5IU390_DA391NANNANT00.83AAS1
1056k3j-m14_B_5IU390_DA391AAAAA00750.26AA00
1066k3j-m15_B_5IU390_DA391OPNOPS1600.46OPS1
1076k3j-m16_B_5IU390_DA391AAAAA00780.25AA00
1086k3j-m17_B_5IU390_DA391A-BAB05830.36AB05
1096k3j-m18_B_5IU390_DA391NANNANT00.99BB00
1106k3j-m19_B_5IU390_DA391NANNANT00.67AAS1
1116k3j-m1_B_5IU390_DA391SYNAAS1280.68AAS1
1126k3j-m20_B_5IU390_DA391SYNAAS1450.67AAS1
1136k3j-m2_B_5IU390_DA391AAAAA00790.25AA00
1146k3j-m3_B_5IU390_DA391NANNANT00.68AAS1
1156k3j-m4_B_5IU390_DA391NANNANT01.03OP12
1166k3j-m5_B_5IU390_DA391NANNANT00.70AAS1
1176k3j-m6_B_5IU390_DA391NANNANT01.03OP12
1186k3j-m7_B_5IU390_DA391NANNANT00.67AAS1
1196k3j-m8_B_5IU390_DA391AAAAA00350.29AA00
1206k3j-m9_B_5IU390_DA391AAAAA00340.32AA00
1216k3j-m10_B_DA391_DA392AAAAA00700.29AA00
1226k3j-m11_B_DA391_DA392AAAAA00560.32AA00
1236k3j-m12_B_DA391_DA392AAAAA00510.34AA00
1246k3j-m13_B_DA391_DA392AAAAA00400.39AA00
1256k3j-m14_B_DA391_DA392AAAAA00670.30AA00
1266k3j-m15_B_DA391_DA392AAAAA00420.36AA00
1276k3j-m16_B_DA391_DA392AAAAA00620.31AA00
1286k3j-m17_B_DA391_DA392NANNANT00.94BA08
1296k3j-m18_B_DA391_DA392NANNANT00.68BB00
1306k3j-m19_B_DA391_DA392AAAAA00570.32AA00
1316k3j-m1_B_DA391_DA392AAAAA00600.31AA00
1326k3j-m20_B_DA391_DA392AAAAA00750.26AA00
1336k3j-m2_B_DA391_DA392AAAAA00780.26AA00
1346k3j-m3_B_DA391_DA392AAAAA00790.25AA00
1356k3j-m4_B_DA391_DA392AAAAA00610.31AA00
1366k3j-m5_B_DA391_DA392AAAAA00560.32AA00
1376k3j-m6_B_DA391_DA392AAAAA00650.31AA00
1386k3j-m7_B_DA391_DA392AAAAA00660.29AA00
1396k3j-m8_B_DA391_DA392AAAAA00470.35AA00
1406k3j-m9_B_DA391_DA392AAAAA00670.29AA00
1416k3j-m10_B_DA392_DT393AAAAA00360.36AA00
1426k3j-m11_B_DA392_DT393AAAAA00350.40AA00
1436k3j-m12_B_DA392_DT393AAAAA00490.35AA00
1446k3j-m13_B_DA392_DT393AAAAA00480.35AA00
1456k3j-m14_B_DA392_DT393AAAAA00290.41AA00
1466k3j-m15_B_DA392_DT393AAAAA00390.38AA00
1476k3j-m16_B_DA392_DT393AAAAA00280.41AA00
1486k3j-m17_B_DA392_DT393AAAAA00380.39AA00
1496k3j-m18_B_DA392_DT393NANNANT00.73BA01
1506k3j-m19_B_DA392_DT393AAAAA00350.40AA00
1516k3j-m1_B_DA392_DT393AAAAA00480.36AA00
1526k3j-m20_B_DA392_DT393AAAAA00520.34AA00
1536k3j-m2_B_DA392_DT393AAAAA00460.36AA00
1546k3j-m3_B_DA392_DT393AAAAA00410.38AA00
1556k3j-m4_B_DA392_DT393AAAAA00480.36AA00
1566k3j-m5_B_DA392_DT393AAAAA00340.39AA00
1576k3j-m6_B_DA392_DT393AAAAA00540.34AA00
1586k3j-m7_B_DA392_DT393AAAAA00390.38AA00
1596k3j-m8_B_DA392_DT393AAAAA00350.39AA00
1606k3j-m9_B_DA392_DT393AAAAA00520.34AA00
1616k3j-m10_B_DT393_DT394AAAAA00680.30AA00
1626k3j-m11_B_DT393_DT394AAAAA00500.35AA00
1636k3j-m12_B_DT393_DT394AAAAA00590.33AA00
1646k3j-m13_B_DT393_DT394AAAAA00560.34AA00
1656k3j-m14_B_DT393_DT394AAAAA00580.33AA00
1666k3j-m15_B_DT393_DT394AAAAA00570.34AA00
1676k3j-m16_B_DT393_DT394AAAAA00390.38AA00
1686k3j-m17_B_DT393_DT394AAAAA00530.35AA00
1696k3j-m18_B_DT393_DT394AAAAA00550.34AA00
1706k3j-m19_B_DT393_DT394AAAAA00530.35AA00
1716k3j-m1_B_DT393_DT394AAAAA00620.33AA00
1726k3j-m20_B_DT393_DT394AAAAA00600.33AA00
1736k3j-m2_B_DT393_DT394AAAAA00550.34AA00
1746k3j-m3_B_DT393_DT394AAAAA00510.35AA00
1756k3j-m4_B_DT393_DT394AAAAA00490.35AA00
1766k3j-m5_B_DT393_DT394AAAAA00620.32AA00
1776k3j-m6_B_DT393_DT394AAAAA00640.32AA00
1786k3j-m7_B_DT393_DT394AAAAA00570.34AA00
1796k3j-m8_B_DT393_DT394AAAAA00370.38AA00
1806k3j-m9_B_DT393_DT394AAAAA00620.32AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N