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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of HIRAN domain of HLTF in complex with duplex DNA

Results of the assignment of 11 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016kcs_B_DT3_DG4A-BAB05200.52AB05
026kcs_B_DG4_DT5BBBBB00850.12BB00
036kcs_B_DT5_DA6BB2BB07620.23BB07
046kcs_B_DA6_DC7B-ABA05800.32BA05
056kcs_B_DC7_DG8A-BAB03550.28AB03
066kcs_B_DG8_DT9BBBBB00920.12BB00
076kcs_B_DT9_DA10BB2BB07880.24BB07
086kcs_B_DA10_DC11BBBBB00700.23BB00
096kcs_B_DC11_DA12NANNANT01.24OP22
106kcs_B_DA12_DG13NANNANT01.39OP16
116kcs_B_DG13_DT14NANNANT00.29BBS1

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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