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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 5 nt

Results of the assignment of 43 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016kqf_G_DG4_DC5BBBBB00310.36BB00
026kqf_G_DC5_DA6NANNANT00.53BB11
036kqf_G_DA6_DT7BBBBB00510.34BB00
046kqf_G_DT7_DC8NANNANT00.39BB17
056kqf_G_DC8_DC9BBBBB00410.27BB00
066kqf_G_DC9_DG10BBBBB00840.29BB00
076kqf_G_DG10_DT11B-ABA05130.38BA05
086kqf_G_DT11_DG12NANNANT00.48BA16
096kqf_G_DG12_DA13AAAAA09500.24AA09
106kqf_G_DA13_DG14NANNANT00.86OP06
116kqf_G_DG14_DT15AAAAA00670.25AA00
126kqf_G_DT15_DC16AAAAA08310.47AA08
136kqf_G_DC16_DG17AAAAA08700.23AA08
146kqf_G_DG17_DA18AAAAA08550.27AA08
156kqf_G_DA18_DG19AAAAA00130.29AA00
166kqf_G_DG19_DG20NANNANT00.49AB03
176kqf_H_DT1_DA2NANNANT01.04ZZS1
186kqf_H_DA2_DT3NANNANT00.97OP13
196kqf_H_DT3_DA4BBwBB16810.33BB16
206kqf_H_DA4_DA5BBBBB00740.22BB00
216kqf_H_DA5_DT6NANNANT00.60OP20
226kqf_H_DT6_DG7NANNANT01.55OP30
236kqf_H_DG7_DG8NANNANT01.20OP22
246kqf_H_DG8_DG9BBBBB00680.28BB00
256kqf_H_DG9_DA10NANNANT00.63BA17
266kqf_H_DA10_DG11NANNANT00.75AA10
276kqf_H_DG11_DC12NANNANT00.41OP30
286kqf_H_DC12_DT13A-BAB05560.37AB05
296kqf_H_DT13_DG14NANNANT01.49OP28
306kqf_H_DG14_DT15NANNANT01.39OP13
316kqf_H_DT15_DC16BBBBB00850.22BB00
326kqf_H_DC16_DA17miBBB10500.36BB10
336kqf_H_DA17_DC18B12BB04770.17BB04
346kqf_H_DC18_DG19miBBB10570.37BB10
356kqf_H_DG19_DG20NANNANT00.53BB00
366kqf_H_DG20_DA21NANNANT00.70AB01
376kqf_H_DA21_DT22NANNANT00.59BB03
386kqf_H_DT22_DG23NANNANT00.90BB07
396kqf_H_DG23_DC24NANNANT00.92BB08
406kqf_I_C1_U2AAAAA08850.24AA08
416kqf_I_U2_C3AAAAA00940.16AA00
426kqf_I_C3_G4AAAAA00690.17AA00
436kqf_I_G4_A5AAAAA00890.10AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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