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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 6 nt

Results of the assignment of 45 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016kqg_G_DG4_DC5NANNANT00.60BB15
026kqg_G_DC5_DA6BBwBB11490.30BB11
036kqg_G_DA6_DT7BBwBB16320.68BB16
046kqg_G_DT7_DC8B12BB04520.23BB04
056kqg_G_DC8_DC9BBBBB00790.24BB00
066kqg_G_DC9_DG10BBBBB00890.19BB00
076kqg_G_DG10_DT11B12BB04350.33BB04
086kqg_G_DT11_DG12B-ABA13660.28BA13
096kqg_G_DG12_DA13AAAAA03470.22AA03
106kqg_G_DA13_DG14NANNANT00.89OP06
116kqg_G_DG14_DT15AAAAA00360.35AA00
126kqg_G_DT15_DC16AAAAA08520.31AA08
136kqg_G_DC16_DG17AAwAA06770.19AA06
146kqg_G_DG17_DA18NANNANT00.45AA03
156kqg_G_DA18_DG19AAAAA03370.34AA03
166kqg_G_DG19_DG20NANNANT00.42BB10
176kqg_G_DG20_DG21NANNANT00.90BB02
186kqg_H_DT1_DA2NANNANT01.07ZZS1
196kqg_H_DA2_DT3NANNANT01.10OP14
206kqg_H_DT3_DA4BBBBB00180.61BB00
216kqg_H_DA4_DA5BBBBB00460.24BB00
226kqg_H_DA5_DT6NANNANT00.61OP20
236kqg_H_DT6_DG7NANNANT01.55OP30
246kqg_H_DG7_DG8NANNANT01.16OP22
256kqg_H_DG8_DG9BBBBB00810.31BB00
266kqg_H_DG9_DA10BB2BB07550.20BB07
276kqg_H_DA10_DG11NANNANT00.58BA16
286kqg_H_DG11_DC12NANNANT01.18OP29
296kqg_H_DC12_DT13A-BAB05330.28AB05
306kqg_H_DT13_DG14NANNANT01.46OP28
316kqg_H_DG14_DT15NANNANT01.00OP30
326kqg_H_DT15_DC16miBBB10480.20BB10
336kqg_H_DC16_DA17B12BB04290.23BB04
346kqg_H_DA17_DC18B-ABA01810.32BA01
356kqg_H_DC18_DG19A-BAB01270.32AB01
366kqg_H_DG19_DG20BBwBB17560.31BB17
376kqg_H_DG20_DA21miBBB10480.54BB10
386kqg_H_DA21_DT22BBwBB17680.18BB17
396kqg_H_DT22_DG23BBBBB00580.29BB00
406kqg_H_DG23_DC24NANNANT00.47BB10
416kqg_I_C2_C3AAAAA00780.26AA00
426kqg_I_C3_U4AAAAA08790.21AA08
436kqg_I_U4_C5AAAAA00850.17AA00
446kqg_I_C5_G6AAAAA00890.14AA00
456kqg_I_G6_A7AAAAA00950.07AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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