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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Structural Basis for DNA Unwinding at Forked dsDNA by two coordinating Pif1 helicases

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016l3g_D_DT4_DT5NANNANT00.65OP12
026l3g_D_DT5_DT6NANNANT00.62AB04
036l3g_D_DT6_DT7B-ABA01830.12BA01
046l3g_D_DT7_DT8NANNANT00.88OP08
056l3g_D_DT8_DT9NANNANT00.48AA09
066l3g_D_DT9_DT10NANNANT01.92OP17
076l3g_D_DT10_DC11NANNANT01.82OP05
086l3g_D_DC11_DG12NANNANT00.57BBS1
096l3g_D_DG12_DC13BB2BB07640.33BB07
106l3g_D_DC13_DG14B-ABA01730.27BA01
116l3g_D_DG14_DC15A-BAB01770.28AB01
126l3g_D_DC15_DG16BBBBB00860.21BB00
136l3g_D_DG16_DC17BBBBB00830.28BB00
146l3g_D_DC17_DG18BB2BB07690.26BB07
156l3g_D_DG18_DC19BBBBB00770.39BB00
166l3g_D_DC19_DG20NANNANT00.80OP12
176l3g_D_DG20_DT21NANNANT00.56AA01
186l3g_D_DT21_DT22AAAAA08330.38AA08
196l3g_D_DT22_DT23NANNANT00.91BB1S
206l3g_D_DT23_DT24NANNANT00.59BBS1

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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