Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structural basis of NR4A2 homodimers binding to selective Nur-responsive elements

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016l6l_C_DA1_DA2BBBBB00700.23BB00
026l6l_C_DA2_DA3B-ABA08840.30BA08
036l6l_C_DA3_DG4A-BAB05830.23AB05
046l6l_C_DG4_DG5BBBBB00730.21BB00
056l6l_C_DG5_DT6BBBBB01770.17BB01
066l6l_C_DT6_DC7A-BAB03260.39AB03
076l6l_C_DC7_DA8BB2BB07780.37BB07
086l6l_C_DA8_DA9BBBBB01700.19BB01
096l6l_C_DA9_DA10BBBBB01830.23BB01
106l6l_C_DA10_DC11B-ABA05770.27BA05
116l6l_C_DC11_DT12BBBBB01560.19BB01
126l6l_C_DT12_DG13BBBBB00170.27BB00
136l6l_C_DG13_DT14B-ABA08670.40BA08
146l6l_C_DT14_DG15A-BAB03470.31AB03
156l6l_C_DG15_DA16BB2BB07860.26BB07
166l6l_C_DA16_DC17BBBBB01670.20BB01
176l6l_C_DC17_DC18B-ABA05630.31BA05
186l6l_C_DC18_DT19A-BAB01610.29AB01
196l6l_C_DT19_DA20BBBBB00790.21BB00
206l6l_C_DA20_DT21B-ABA10400.49BA10
216l6l_D_DT1_DA2BBBBB00410.38BB00
226l6l_D_DA2_DT3BBBBB00740.24BB00
236l6l_D_DT3_DA4B-ABA08850.28BA08
246l6l_D_DA4_DG5A-BAB05860.24AB05
256l6l_D_DG5_DG6BBBBB00620.30BB00
266l6l_D_DG6_DT7BBBBB00750.23BB00
276l6l_D_DT7_DC8miBBB10410.35BB10
286l6l_D_DC8_DA9BB2BB07200.60BB07
296l6l_D_DA9_DC10B-ABA05870.21BA05
306l6l_D_DC10_DA11BBBBB01560.26BB01
316l6l_D_DA11_DG12BBBBB00110.24BB00
326l6l_D_DG12_DT13BBBBB01420.24BB01
336l6l_D_DT13_DT14BBBBB00670.25BB00
346l6l_D_DT14_DT15B-ABA01360.20BA01
356l6l_D_DT15_DG16NANNANT00.57AB02
366l6l_D_DG16_DA17B-ABA17680.42BA17
376l6l_D_DA17_DC18B-ABA05650.31BA05
386l6l_D_DC18_DC19BBBBB00330.24BB00
396l6l_D_DC19_DT20B12BB04440.26BB04
406l6l_D_DT20_DT21B-ABA05370.51BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N