Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Bst DNA polymerase I FANA/DNA binary complex

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016mu4_P_DG1_DC2BBBBB01780.19BB01
026mu4_P_DC2_DG3BBBBB00780.14BB00
036mu4_P_DG3_DA4BBBBB00790.12BB00
046mu4_P_DA4_DT5BB1BB02520.19BB02
056mu4_P_DT5_DC6BBBBB01720.26BB01
066mu4_P_DC6_DA7BBBBB01860.13BB01
076mu4_P_DA7_DC8BBBBB00490.20BB00
086mu4_P_DC8_DG9B-ABA13850.23BA13
096mu4_P_DG9_DT10AAAAA04830.23AA04
106mu4_P_DT10_DT11AAAAA00710.18AA00
116mu4_T_A5L6_CFL7BBBBB01650.27BB01
126mu4_T_CFL7_GFL8NANNANT00.41BB02
136mu4_T_GFL10_A5L11BBBBB01180.24BB01
146mu4_T_CFL13_GFL14NANNANT00.47AA01
156mu4_T_GFL14_CFL15NANNANT00.82BB08
166mu4_T_CFL15_A5L16A-BAB03580.40AB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N