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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Capistruin

Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016n61_N_DG1_DA2B12BB04420.24BB04
026n61_N_DA2_DC3miBBB10610.29BB10
036n61_N_DC3_DC4miBBB10800.26BB10
046n61_N_DC4_DT5BBBBB01620.26BB01
056n61_N_DT5_DT6BBBBB00630.36BB00
066n61_N_DT6_DC7BBBBB00610.14BB00
076n61_N_DC7_DC8BB1BB03400.28BB03
086n61_N_DC8_DC9NANNANT00.50BB11
096n61_N_DC9_DC10NANNANT00.52BB11
106n61_N_DC10_DT11NANNANT00.59BB02
116n61_N_DT11_DG12BBBBB00290.58BB00
126n61_N_DG12_DA13NANNANT00.77BB07
136n61_N_DA13_DT14NANNANT00.64BA08
146n61_N_DT14_DG15NANNANT00.79AB05
156n61_N_DG15_DG16BBBBB00540.31BB00
166n61_N_DG16_DG17BBBBB00880.30BB00
176n61_N_DG17_DA18B12BB04920.13BB04
186n61_N_DA18_DA19BBBBB00920.12BB00
196n61_N_DA19_DG20BBBBB00450.31BB00
206n61_N_DG20_DG21BBBBB00630.19BB00
216n61_N_DG21_DT22BBBBB00870.12BB00
226n61_N_DT22_DT23BB1BB02510.27BB02
236n61_N_DT23_DT24BBBBB00360.33BB00
246n61_N_DT24_DA25NANNANT01.62IC03
256n61_N_DA25_DT26NANNANT00.91OP13
266n61_N_DT26_DA27BBBBB00220.64BB00
276n61_N_DA27_DA28NANNANT00.35BB02
286n61_N_DA28_DT29NANNANT00.86OP20
296n61_T_DA1_DA2BBBBB00540.34BB00
306n61_T_DA2_DA3miBBB10390.41BB10
316n61_T_DA3_DC4B12BB04620.19BB04
326n61_T_DC4_DC5BBBBB00590.31BB00
336n61_T_DC5_DT6BBBBB00760.22BB00
346n61_T_DT6_DT7BBBBB00750.20BB00
356n61_T_DT7_DC8BBBBB00830.26BB00
366n61_T_DC8_DC9BBBBB00530.19BB00
376n61_T_DC9_DC10NANNANT00.59BB02
386n61_T_DC10_DA11NANNANT00.62AB03
396n61_T_DA11_DT12BB1BB03260.48BB03
406n61_T_DT12_DC13NANNANT00.50BB11
416n61_T_DC13_DA14NANNANT00.48BB11
426n61_T_DA14_DG15BB1BB02330.31BB02
436n61_T_DG15_DG16BB1BB02130.26BB02
446n61_T_DG16_DG17BBBBB00670.36BB00
456n61_T_DG17_DG18miBBB10850.19BB10
466n61_T_DG18_DA19NANNANT00.55BB05
476n61_T_DA19_DA20NANNANT00.50BB02
486n61_T_DA20_DG21BBBBB00650.32BB00
496n61_T_DG21_DG22BBBBB00580.40BB00
506n61_T_DG22_DT23BB1BB0290.35BB02
516n61_T_DT23_DC24NANNANT00.85BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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